2018-03-19 12:17

6 files changed, 44 insertions, 16 deletions

diff --git a/build.sh b/build.sh
index bf0c5c0..7abca57 100755
--- a/build.sh
+++ b/build.sh
@@ -48,7 +48,7 @@ fi
 if [[ "$1" = "all" ]] || [[ "$1" = "dissertation" ]] ; then
   printLine
   printColor documents
-  pdflatex --interaction=errorstopmode --shell-escape dissertation
+  pdflatex --interaction=nonstopmode --shell-escape dissertation
   bibtex dissertation
   pdflatex --interaction=nonstopmode --shell-escape dissertation
   pdflatex --interaction=nonstopmode --shell-escape dissertation
diff --git a/dissertation.cls b/dissertation.cls
index 452057b..c22e3c8 100644
--- a/dissertation.cls
+++ b/dissertation.cls
@@ -27,6 +27,8 @@
 }
 \pagestyle{plain}{\rhead{\thepage}}
 
+\setlength{\headheight}{11pt}
+
 % --- text ----------------------------------------------------------------------------------------
 
 % text
diff --git a/dissertation.pdf b/dissertation.pdf
index 49de813..791884c 100644
--- a/dissertation.pdf
+++ b/dissertation.pdf
diff --git a/dissertation.syg b/dissertation.syg
index dc35a96..3d211de 100644
--- a/dissertation.syg
+++ b/dissertation.syg
@@ -1,3 +1,2 @@
 \glossaryentry{\ensuremath {N}?\glossentry{N}|setentrycounter[]{page}\glsnumberformat}{10}
 \glossaryentry{\ensuremath {N}?\glossentry{N}|setentrycounter[]{page}\glsnumberformat}{10}
-\glossaryentry{\ensuremath {\omega }?\glossentry{omega}|setentrycounter[]{page}\glsnumberformat}{40}
diff --git a/dissertation.tex b/dissertation.tex
index d6df71d..22e0383 100644
--- a/dissertation.tex
+++ b/dissertation.tex
@@ -69,17 +69,17 @@ This dissertation is approved by the following members of the Final Oral Committ
 \part{Development}

 \include{processing/chapter}

 \include{acquisition/chapter}

-\include{active_correction/chapter}

-\include{opa/chapter}

-\include{mixed_domain/chapter}

+%\include{active_correction/chapter}

+%\include{opa/chapter}

+%\include{mixed_domain/chapter}

 

 \part{Applications}

-\include{PbSe/chapter}

-\include{MX2/chapter}

+%\include{PbSe/chapter}

+%\include{MX2/chapter}

 % TODO: perovskites

-\include{PEDOT:PSS/chapter}

-\include{pyrite/chapter}

-\include{BiVO4/chapter}

+%\include{PEDOT:PSS/chapter}

+%\include{pyrite/chapter}

+%\include{BiVO4/chapter}

 % TODO: SPV

 % TODO: consider cobalamin chapter

 

@@ -87,12 +87,12 @@ This dissertation is approved by the following members of the Final Oral Committ
 

 \part{Appendix}

 \begin{appendix}

-\include{public/chapter}

-\include{procedures/chapter}

-\include{hardware/chapter}

+%\include{public/chapter}

+%\include{procedures/chapter}

+%\include{hardware/chapter}

 % TODO: consider inserting WrightTools documentation as PDF

-\include{errata/chapter}

-\include{colophon/chapter}

+%\include{errata/chapter}

+%\include{colophon/chapter}

 \end{appendix}

 

 % post --------------------------------------------------------------------------------------------

diff --git a/processing/chapter.tex b/processing/chapter.tex
index 9cd0954..9c9ccab 100644
--- a/processing/chapter.tex
+++ b/processing/chapter.tex
@@ -72,7 +72,6 @@ objects) in a hierarchical way for internal organization purposes.  %
 

 \section{Data object model}  % ====================================================================

 

-

 WrightTools uses a programming strategy called object oriented programming (OOP).  %

 

 It contains a central data ``container'' that is capable of storing all of the information about

@@ -99,8 +98,36 @@ spectrum, and channels are each a particular kind of signal within that spectrum
 Typical variables might be \mintinline{python}{[w1, w2, w3, d1, d2]}, and typical channels

 \mintinline{python}{[pmt, pyro1, pyro2, pyro3]}.  %

 

+\subsection{Dimensionality manipulation}  % -------------------------------------------------------

+

+\subsubsection{Chop}

+

+\subsubsection{Collapse}

+

+\subsubsection{Split}

+

 \section{Artists}  % ==============================================================================

 

+After importing and manipulating data, one typically wants to create a plot.  %

+The artists sub-package contains everything users need to plot their data objects.  %

+This includes both ``quick'' artists, which generate simple plots as quickly as possible, and a

+full figure layout toolkit that allows users to generate full publication quality figures.  %

+It also includes ``specialty'' artists which are made to perform certain popular plotting

+operations, as I will describe below.  %

+

+Currently the artists sub-package is built on-top of the wonderful matplotlib library.  %

+In the future, other libraries (e.g. mayavi), may be incorporated.  %

+

+\subsection{Quick}  % -----------------------------------------------------------------------------

+

+\subsubsection{1D}

+

+\subsubsection{2D}

+

+\subsection{Specialty}  % -------------------------------------------------------------------------

+

+\subsection{Artists API}  % -----------------------------------------------------------------------

+

 \subsection{Colormaps}  % -------------------------------------------------------------------------

 

 \subsection{Interpolation}  % ---------------------------------------------------------------------