From f5b439d81f44dad0345031d1d72a783b4b429ef9 Mon Sep 17 00:00:00 2001
From: Blaise Thompson <blaise@untzag.com>
Date: Mon, 19 Mar 2018 12:17:41 -0500
Subject: 2018-03-19 12:17

---
 build.sh               |   2 +-
 dissertation.cls       |   2 ++
 dissertation.pdf       | Bin 34321654 -> 1007328 bytes
 dissertation.syg       |   1 -
 dissertation.tex       |  26 +++++++++++++-------------
 processing/chapter.tex |  29 ++++++++++++++++++++++++++++-
 6 files changed, 44 insertions(+), 16 deletions(-)

diff --git a/build.sh b/build.sh
index bf0c5c0..7abca57 100755
--- a/build.sh
+++ b/build.sh
@@ -48,7 +48,7 @@ fi
 if [[ "$1" = "all" ]] || [[ "$1" = "dissertation" ]] ; then
   printLine
   printColor documents
-  pdflatex --interaction=errorstopmode --shell-escape dissertation
+  pdflatex --interaction=nonstopmode --shell-escape dissertation
   bibtex dissertation
   pdflatex --interaction=nonstopmode --shell-escape dissertation
   pdflatex --interaction=nonstopmode --shell-escape dissertation
diff --git a/dissertation.cls b/dissertation.cls
index 452057b..c22e3c8 100644
--- a/dissertation.cls
+++ b/dissertation.cls
@@ -27,6 +27,8 @@
 }
 \pagestyle{plain}{\rhead{\thepage}}
 
+\setlength{\headheight}{11pt}
+
 % --- text ----------------------------------------------------------------------------------------
 
 % text
diff --git a/dissertation.pdf b/dissertation.pdf
index 49de813..791884c 100644
Binary files a/dissertation.pdf and b/dissertation.pdf differ
diff --git a/dissertation.syg b/dissertation.syg
index dc35a96..3d211de 100644
--- a/dissertation.syg
+++ b/dissertation.syg
@@ -1,3 +1,2 @@
 \glossaryentry{\ensuremath {N}?\glossentry{N}|setentrycounter[]{page}\glsnumberformat}{10}
 \glossaryentry{\ensuremath {N}?\glossentry{N}|setentrycounter[]{page}\glsnumberformat}{10}
-\glossaryentry{\ensuremath {\omega }?\glossentry{omega}|setentrycounter[]{page}\glsnumberformat}{40}
diff --git a/dissertation.tex b/dissertation.tex
index d6df71d..22e0383 100644
--- a/dissertation.tex
+++ b/dissertation.tex
@@ -69,17 +69,17 @@ This dissertation is approved by the following members of the Final Oral Committ
 \part{Development}
 \include{processing/chapter}
 \include{acquisition/chapter}
-\include{active_correction/chapter}
-\include{opa/chapter}
-\include{mixed_domain/chapter}
+%\include{active_correction/chapter}
+%\include{opa/chapter}
+%\include{mixed_domain/chapter}
 
 \part{Applications}
-\include{PbSe/chapter}
-\include{MX2/chapter}
+%\include{PbSe/chapter}
+%\include{MX2/chapter}
 % TODO: perovskites
-\include{PEDOT:PSS/chapter}
-\include{pyrite/chapter}
-\include{BiVO4/chapter}
+%\include{PEDOT:PSS/chapter}
+%\include{pyrite/chapter}
+%\include{BiVO4/chapter}
 % TODO: SPV
 % TODO: consider cobalamin chapter
 
@@ -87,12 +87,12 @@ This dissertation is approved by the following members of the Final Oral Committ
 
 \part{Appendix}
 \begin{appendix}
-\include{public/chapter}
-\include{procedures/chapter}
-\include{hardware/chapter}
+%\include{public/chapter}
+%\include{procedures/chapter}
+%\include{hardware/chapter}
 % TODO: consider inserting WrightTools documentation as PDF
-\include{errata/chapter}
-\include{colophon/chapter}
+%\include{errata/chapter}
+%\include{colophon/chapter}
 \end{appendix}
 
 % post --------------------------------------------------------------------------------------------
diff --git a/processing/chapter.tex b/processing/chapter.tex
index 9cd0954..9c9ccab 100644
--- a/processing/chapter.tex
+++ b/processing/chapter.tex
@@ -72,7 +72,6 @@ objects) in a hierarchical way for internal organization purposes.  %
 
 \section{Data object model}  % ====================================================================
 
-
 WrightTools uses a programming strategy called object oriented programming (OOP).  %
 
 It contains a central data ``container'' that is capable of storing all of the information about
@@ -99,8 +98,36 @@ spectrum, and channels are each a particular kind of signal within that spectrum
 Typical variables might be \mintinline{python}{[w1, w2, w3, d1, d2]}, and typical channels
 \mintinline{python}{[pmt, pyro1, pyro2, pyro3]}.  %
 
+\subsection{Dimensionality manipulation}  % -------------------------------------------------------
+
+\subsubsection{Chop}
+
+\subsubsection{Collapse}
+
+\subsubsection{Split}
+
 \section{Artists}  % ==============================================================================
 
+After importing and manipulating data, one typically wants to create a plot.  %
+The artists sub-package contains everything users need to plot their data objects.  %
+This includes both ``quick'' artists, which generate simple plots as quickly as possible, and a
+full figure layout toolkit that allows users to generate full publication quality figures.  %
+It also includes ``specialty'' artists which are made to perform certain popular plotting
+operations, as I will describe below.  %
+
+Currently the artists sub-package is built on-top of the wonderful matplotlib library.  %
+In the future, other libraries (e.g. mayavi), may be incorporated.  %
+
+\subsection{Quick}  % -----------------------------------------------------------------------------
+
+\subsubsection{1D}
+
+\subsubsection{2D}
+
+\subsection{Specialty}  % -------------------------------------------------------------------------
+
+\subsection{Artists API}  % -----------------------------------------------------------------------
+
 \subsection{Colormaps}  % -------------------------------------------------------------------------
 
 \subsection{Interpolation}  % ---------------------------------------------------------------------
-- 
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