2018-02-28 19:47

6 files changed, 33 insertions, 18 deletions

diff --git a/PEDOT:PSS/README.pdf b/PEDOT:PSS/README.pdf
new file mode 100644
index 0000000..dc364f9
--- /dev/null
+++ b/PEDOT:PSS/README.pdf
diff --git a/bibliography.bib b/bibliography.bib
index c7d932a..30ea418 100644
--- a/bibliography.bib
+++ b/bibliography.bib
@@ -432,7 +432,15 @@ year = {1998}
   publisher =    {American Chemical Society ({ACS})},

 }

 

-@article{DonaldsonPaulM2007a,

+@phdthesis{DonaldsonPaulMurray2007a,

+  author =       {Donaldson, Paul Murray},

+  school =       {Imperial College London},

+  title =        {Two Dimensional Infrared Four Wave Mixing Spectroscopy of Simple Molecules,

+                  Peptides, and Proteins},

+  year =         2012,

+}

+

+@article{DonaldsonPaulMurray2007b,

   author =       {Donaldson, Paul M and Guo, Rui and Fournier, Frederic and Gardner, Elizabeth M

                   and Barter, Laura M C and Barnett, Chris J and Gould, Ian R and Klug, David R and

                   Palmer, D Jason and Willison, Keith R},

@@ -449,7 +457,7 @@ year = {1998}
 }

 

 

-@article{DonaldsonPaulM2008a,

+@article{DonaldsonPaulMurray2008a,

   author =       {Donaldson, Paul M and Guo, Rui and Fournier, Frederic and Gardner, Elizabeth M

                   and Gould, Ian R and Klug, David R},

   title =        {{Decongestion of methylene spectra in biological and non-biological systems using

@@ -467,7 +475,7 @@ year = {1998}
   month =        {jun},

 }

 

-@article{DonaldsonPaulM2010a,

+@article{DonaldsonPaulMurray2010a,

   author =       {Donaldson, Paul M and Willison, Keith R and Klug, David R},

   title =        {{Generation of Simplified Protein Raman Spectra Using Three-Color Picosecond

                   Coherent Anti-Stokes Raman Spectroscopy}},

diff --git a/dissertation.pdf b/dissertation.pdf
index 5c0e730..57694f0 100644
--- a/dissertation.pdf
+++ b/dissertation.pdf
diff --git a/dissertation.tex b/dissertation.tex
index 515c5e3..ca8fb47 100644
--- a/dissertation.tex
+++ b/dissertation.tex
@@ -24,17 +24,17 @@ Doctor of Philosophy \\
 \vspace{40 pt}

 at the \\

 UNIVERSITY OF WISCONSIN - MADISON \\

-20xx \\

-\vspace{200 pt}

+2018 \\

 \end{centering}

 

-\noindent Date of final oral examination: xx/xx/xxxx \\

+\vfill

+

+\noindent Date of final oral examination: April 23, 2018 \\

 This dissertation is approved by the following members of the Final Oral Committee: \\

 \-\hspace{1cm} John C. Wright, Professor, Analytical Chemistry \\

-\-\hspace{1cm} x \\

-\-\hspace{1cm} x \\

-\-\hspace{1cm} x \\

-\-\hspace{1cm} x \\

+\-\hspace{1cm} Randall Goldsmith, Professor, Analytical Chemistry \\

+\-\hspace{1cm} Tim Bertram, Professor, Analytical Chemistry \\

+\-\hspace{1cm} Kyoung-Shin Choi, Professor, Materials Chemistry \\

 

 \pagenumbering{gobble}

 \cleardoublepage  % TODO: remove page number

diff --git a/mixed_domain/chapter.tex b/mixed_domain/chapter.tex
index aad2be1..12b0278 100644
--- a/mixed_domain/chapter.tex
+++ b/mixed_domain/chapter.tex
@@ -85,7 +85,7 @@ shift (3PEPS) \cite{EmdeMichelF1998a, DeBoeijWimP1996a, DeBoeijWimP1995a, ChoMin
 These methods also include fully-coherent methods involving only coherences such as Stimulated

 Raman Spectroscopy (SRS) \cite{YoonSangwoon2005a, McCamantDavidW2005a}, Doubly Vibrationally

 Enhanced (DOVE) \cite{ZhaoWei1999a, ZhaoWei1999b, ZhaoWei2000a, MeyerKentA2003a,

-  DonaldsonPaulM2007a, DonaldsonPaulM2008a, FournierFrederic2008a},

+  DonaldsonPaulMurray2007b, DonaldsonPaulMurray2008a, FournierFrederic2008a},

 Triply Resonant Sum Frequency (TRSF) \cite{BoyleErinSelene2013a, BoyleErinSelene2013b,

   BoyleErinSelene2014a}, Sum Frequency Generation (SFG) \cite{LagutchevAlexi2007a}, Coherent

 Anti-Stokes Raman Spectroscopy (CARS) \cite{CarlsonRogerJ1990b, CarlsonRogerJ1990c,

@@ -106,13 +106,13 @@ capabilities for measuring homogeneous and inhomogeneous broadening.  %
 Although these experiments are typically described in the driven

 limit, \cite{GallagherSarahM1998a, FourkasJohnT1992a, FourkasJohnT1992b} many of the experiments

 involve pulse widths that are comparable to the widths of the system. \cite{MeyerKentA2003a,

-  DonaldsonPaulM2007a,  PakoulevAndreiV2009a, ZhaoWei1999a, CzechKyleJonathan2015a,

+  DonaldsonPaulMurray2007b,  PakoulevAndreiV2009a, ZhaoWei1999a, CzechKyleJonathan2015a,

   KohlerDanielDavid2014a}  %

 MR-CMDS then becomes a mixed-domain experiment whereby resonances are characterized with marginal

 resolution in both frequency and time.  %

 For example, DOVE spectroscopy involves three different pathways \cite{WrightJohnCurtis2003a} whose

 relative importance depends on the relative importance of FID and driven

-responses. \cite{DonaldsonPaulM2010a}  %

+responses. \cite{DonaldsonPaulMurray2010a}  %

 In the driven limit, the DOVE line shape depends on the difference between the first two pulse

 frequencies so the line shape has a diagonal character that mimics the effects of inhomogeneous

 broadening.  % 

@@ -679,8 +679,8 @@ amplitudes at $t=0$ (driven)  and at $t / \Delta_t=2$ (FID); amplitudes for all
 $\Omega_{fx}/\Delta_{\omega}$ values shown are comparable at $t=0$, but the lack of FID formation

 for $\Omega_{fx}/\Delta_{\omega}=\pm2$ manifests as a visibly disproportionate amplitude decay.  %

 Many ultrafast spectroscopies take advantage of the latent FID to suppress non-resonant background,

-improving signal to noise. \cite{LagutchevAlexi2007a, LagutchevAlexi2010a, DonaldsonPaulM2010a,

-  DonaldsonPaulM2008a}  %

+improving signal to noise. \cite{LagutchevAlexi2007a, LagutchevAlexi2010a,

+  DonaldsonPaulMurray2010a, DonaldsonPaulMurray2008a}  %

 

 In driven experiments, the output frequency and line shape are fully constrained by the excitation

 beams.  %

@@ -863,8 +863,8 @@ As a result, the line shape acquires a diagonal character.  %
 The changes in line shape seen in Fig. \ref{fig:pw1} have significant ramifications for the

 interpretations and strategies of MR-CMDS in the mixed domain.  %

 Time-gating has been used to isolate the 2D spectra of a certain

-time-ordering\cite{MeyerKentA2004a, PakoulevAndreiV2006a, DonaldsonPaulM2007a}, but here we show that

-time-gating itself causes significant line shape changes to the isolated pathways.  %

+time-ordering\cite{MeyerKentA2004a, PakoulevAndreiV2006a, DonaldsonPaulMurray2007b}, but here we

+show that time-gating itself causes significant line shape changes to the isolated pathways.  %

 The phenomenon of time-gating can cause frequency and delay axes to become functional of each other

 in unexpected ways.  %

 

diff --git a/opa/chapter.tex b/opa/chapter.tex
index ad3e0d2..a83eac5 100644
--- a/opa/chapter.tex
+++ b/opa/chapter.tex
@@ -1,3 +1,10 @@
 \chapter{A robust, fully automated algorithm to collect high quality OPA tuning curves}

 

-This chapter pasted from publication...
\ No newline at end of file
+\textit{Principle design features of the new EVV 2DIR optical delivery system include the

+  following: ... Pairs of motorized gimbal mount mirrors on each OPA to compensate beam pointing

+  changes ... Automated calibration of OPAs, delay stages and motorized mounts.

+  ---\textcite{DonaldsonPaulMurray2007a}}  % page 313

+

+This chapter pasted from publication...

+

+% DONALDSON HAS AUTOMATED OPA TUNING DOWN?
\ No newline at end of file