From 7b507a18e841f56a534dad25e1a68a17cf6fe280 Mon Sep 17 00:00:00 2001
From: Blaise Thompson <blaise@untzag.com>
Date: Wed, 28 Feb 2018 19:47:36 -0600
Subject: 2018-02-28 19:47
---
PEDOT:PSS/README.pdf | Bin 0 -> 80369 bytes
bibliography.bib | 14 +++++++++++---
dissertation.pdf | Bin 34272421 -> 34273594 bytes
dissertation.tex | 14 +++++++-------
mixed_domain/chapter.tex | 14 +++++++-------
opa/chapter.tex | 9 ++++++++-
6 files changed, 33 insertions(+), 18 deletions(-)
create mode 100644 PEDOT:PSS/README.pdf
diff --git a/PEDOT:PSS/README.pdf b/PEDOT:PSS/README.pdf
new file mode 100644
index 0000000..dc364f9
Binary files /dev/null and b/PEDOT:PSS/README.pdf differ
diff --git a/bibliography.bib b/bibliography.bib
index c7d932a..30ea418 100644
--- a/bibliography.bib
+++ b/bibliography.bib
@@ -432,7 +432,15 @@ year = {1998}
publisher = {American Chemical Society ({ACS})},
}
-@article{DonaldsonPaulM2007a,
+@phdthesis{DonaldsonPaulMurray2007a,
+ author = {Donaldson, Paul Murray},
+ school = {Imperial College London},
+ title = {Two Dimensional Infrared Four Wave Mixing Spectroscopy of Simple Molecules,
+ Peptides, and Proteins},
+ year = 2012,
+}
+
+@article{DonaldsonPaulMurray2007b,
author = {Donaldson, Paul M and Guo, Rui and Fournier, Frederic and Gardner, Elizabeth M
and Barter, Laura M C and Barnett, Chris J and Gould, Ian R and Klug, David R and
Palmer, D Jason and Willison, Keith R},
@@ -449,7 +457,7 @@ year = {1998}
}
-@article{DonaldsonPaulM2008a,
+@article{DonaldsonPaulMurray2008a,
author = {Donaldson, Paul M and Guo, Rui and Fournier, Frederic and Gardner, Elizabeth M
and Gould, Ian R and Klug, David R},
title = {{Decongestion of methylene spectra in biological and non-biological systems using
@@ -467,7 +475,7 @@ year = {1998}
month = {jun},
}
-@article{DonaldsonPaulM2010a,
+@article{DonaldsonPaulMurray2010a,
author = {Donaldson, Paul M and Willison, Keith R and Klug, David R},
title = {{Generation of Simplified Protein Raman Spectra Using Three-Color Picosecond
Coherent Anti-Stokes Raman Spectroscopy}},
diff --git a/dissertation.pdf b/dissertation.pdf
index 5c0e730..57694f0 100644
Binary files a/dissertation.pdf and b/dissertation.pdf differ
diff --git a/dissertation.tex b/dissertation.tex
index 515c5e3..ca8fb47 100644
--- a/dissertation.tex
+++ b/dissertation.tex
@@ -24,17 +24,17 @@ Doctor of Philosophy \\
\vspace{40 pt}
at the \\
UNIVERSITY OF WISCONSIN - MADISON \\
-20xx \\
-\vspace{200 pt}
+2018 \\
\end{centering}
-\noindent Date of final oral examination: xx/xx/xxxx \\
+\vfill
+
+\noindent Date of final oral examination: April 23, 2018 \\
This dissertation is approved by the following members of the Final Oral Committee: \\
\-\hspace{1cm} John C. Wright, Professor, Analytical Chemistry \\
-\-\hspace{1cm} x \\
-\-\hspace{1cm} x \\
-\-\hspace{1cm} x \\
-\-\hspace{1cm} x \\
+\-\hspace{1cm} Randall Goldsmith, Professor, Analytical Chemistry \\
+\-\hspace{1cm} Tim Bertram, Professor, Analytical Chemistry \\
+\-\hspace{1cm} Kyoung-Shin Choi, Professor, Materials Chemistry \\
\pagenumbering{gobble}
\cleardoublepage % TODO: remove page number
diff --git a/mixed_domain/chapter.tex b/mixed_domain/chapter.tex
index aad2be1..12b0278 100644
--- a/mixed_domain/chapter.tex
+++ b/mixed_domain/chapter.tex
@@ -85,7 +85,7 @@ shift (3PEPS) \cite{EmdeMichelF1998a, DeBoeijWimP1996a, DeBoeijWimP1995a, ChoMin
These methods also include fully-coherent methods involving only coherences such as Stimulated
Raman Spectroscopy (SRS) \cite{YoonSangwoon2005a, McCamantDavidW2005a}, Doubly Vibrationally
Enhanced (DOVE) \cite{ZhaoWei1999a, ZhaoWei1999b, ZhaoWei2000a, MeyerKentA2003a,
- DonaldsonPaulM2007a, DonaldsonPaulM2008a, FournierFrederic2008a},
+ DonaldsonPaulMurray2007b, DonaldsonPaulMurray2008a, FournierFrederic2008a},
Triply Resonant Sum Frequency (TRSF) \cite{BoyleErinSelene2013a, BoyleErinSelene2013b,
BoyleErinSelene2014a}, Sum Frequency Generation (SFG) \cite{LagutchevAlexi2007a}, Coherent
Anti-Stokes Raman Spectroscopy (CARS) \cite{CarlsonRogerJ1990b, CarlsonRogerJ1990c,
@@ -106,13 +106,13 @@ capabilities for measuring homogeneous and inhomogeneous broadening. %
Although these experiments are typically described in the driven
limit, \cite{GallagherSarahM1998a, FourkasJohnT1992a, FourkasJohnT1992b} many of the experiments
involve pulse widths that are comparable to the widths of the system. \cite{MeyerKentA2003a,
- DonaldsonPaulM2007a, PakoulevAndreiV2009a, ZhaoWei1999a, CzechKyleJonathan2015a,
+ DonaldsonPaulMurray2007b, PakoulevAndreiV2009a, ZhaoWei1999a, CzechKyleJonathan2015a,
KohlerDanielDavid2014a} %
MR-CMDS then becomes a mixed-domain experiment whereby resonances are characterized with marginal
resolution in both frequency and time. %
For example, DOVE spectroscopy involves three different pathways \cite{WrightJohnCurtis2003a} whose
relative importance depends on the relative importance of FID and driven
-responses. \cite{DonaldsonPaulM2010a} %
+responses. \cite{DonaldsonPaulMurray2010a} %
In the driven limit, the DOVE line shape depends on the difference between the first two pulse
frequencies so the line shape has a diagonal character that mimics the effects of inhomogeneous
broadening. %
@@ -679,8 +679,8 @@ amplitudes at $t=0$ (driven) and at $t / \Delta_t=2$ (FID); amplitudes for all
$\Omega_{fx}/\Delta_{\omega}$ values shown are comparable at $t=0$, but the lack of FID formation
for $\Omega_{fx}/\Delta_{\omega}=\pm2$ manifests as a visibly disproportionate amplitude decay. %
Many ultrafast spectroscopies take advantage of the latent FID to suppress non-resonant background,
-improving signal to noise. \cite{LagutchevAlexi2007a, LagutchevAlexi2010a, DonaldsonPaulM2010a,
- DonaldsonPaulM2008a} %
+improving signal to noise. \cite{LagutchevAlexi2007a, LagutchevAlexi2010a,
+ DonaldsonPaulMurray2010a, DonaldsonPaulMurray2008a} %
In driven experiments, the output frequency and line shape are fully constrained by the excitation
beams. %
@@ -863,8 +863,8 @@ As a result, the line shape acquires a diagonal character. %
The changes in line shape seen in Fig. \ref{fig:pw1} have significant ramifications for the
interpretations and strategies of MR-CMDS in the mixed domain. %
Time-gating has been used to isolate the 2D spectra of a certain
-time-ordering\cite{MeyerKentA2004a, PakoulevAndreiV2006a, DonaldsonPaulM2007a}, but here we show that
-time-gating itself causes significant line shape changes to the isolated pathways. %
+time-ordering\cite{MeyerKentA2004a, PakoulevAndreiV2006a, DonaldsonPaulMurray2007b}, but here we
+show that time-gating itself causes significant line shape changes to the isolated pathways. %
The phenomenon of time-gating can cause frequency and delay axes to become functional of each other
in unexpected ways. %
diff --git a/opa/chapter.tex b/opa/chapter.tex
index ad3e0d2..a83eac5 100644
--- a/opa/chapter.tex
+++ b/opa/chapter.tex
@@ -1,3 +1,10 @@
\chapter{A robust, fully automated algorithm to collect high quality OPA tuning curves}
-This chapter pasted from publication...
\ No newline at end of file
+\textit{Principle design features of the new EVV 2DIR optical delivery system include the
+ following: ... Pairs of motorized gimbal mount mirrors on each OPA to compensate beam pointing
+ changes ... Automated calibration of OPAs, delay stages and motorized mounts.
+ ---\textcite{DonaldsonPaulMurray2007a}} % page 313
+
+This chapter pasted from publication...
+
+% DONALDSON HAS AUTOMATED OPA TUNING DOWN?
\ No newline at end of file
--
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