From 7b507a18e841f56a534dad25e1a68a17cf6fe280 Mon Sep 17 00:00:00 2001 From: Blaise Thompson Date: Wed, 28 Feb 2018 19:47:36 -0600 Subject: 2018-02-28 19:47 --- PEDOT:PSS/README.pdf | Bin 0 -> 80369 bytes bibliography.bib | 14 +++++++++++--- dissertation.pdf | Bin 34272421 -> 34273594 bytes dissertation.tex | 14 +++++++------- mixed_domain/chapter.tex | 14 +++++++------- opa/chapter.tex | 9 ++++++++- 6 files changed, 33 insertions(+), 18 deletions(-) create mode 100644 PEDOT:PSS/README.pdf diff --git a/PEDOT:PSS/README.pdf b/PEDOT:PSS/README.pdf new file mode 100644 index 0000000..dc364f9 Binary files /dev/null and b/PEDOT:PSS/README.pdf differ diff --git a/bibliography.bib b/bibliography.bib index c7d932a..30ea418 100644 --- a/bibliography.bib +++ b/bibliography.bib @@ -432,7 +432,15 @@ year = {1998} publisher = {American Chemical Society ({ACS})}, } -@article{DonaldsonPaulM2007a, +@phdthesis{DonaldsonPaulMurray2007a, + author = {Donaldson, Paul Murray}, + school = {Imperial College London}, + title = {Two Dimensional Infrared Four Wave Mixing Spectroscopy of Simple Molecules, + Peptides, and Proteins}, + year = 2012, +} + +@article{DonaldsonPaulMurray2007b, author = {Donaldson, Paul M and Guo, Rui and Fournier, Frederic and Gardner, Elizabeth M and Barter, Laura M C and Barnett, Chris J and Gould, Ian R and Klug, David R and Palmer, D Jason and Willison, Keith R}, @@ -449,7 +457,7 @@ year = {1998} } -@article{DonaldsonPaulM2008a, +@article{DonaldsonPaulMurray2008a, author = {Donaldson, Paul M and Guo, Rui and Fournier, Frederic and Gardner, Elizabeth M and Gould, Ian R and Klug, David R}, title = {{Decongestion of methylene spectra in biological and non-biological systems using @@ -467,7 +475,7 @@ year = {1998} month = {jun}, } -@article{DonaldsonPaulM2010a, +@article{DonaldsonPaulMurray2010a, author = {Donaldson, Paul M and Willison, Keith R and Klug, David R}, title = {{Generation of Simplified Protein Raman Spectra Using Three-Color Picosecond Coherent Anti-Stokes Raman Spectroscopy}}, diff --git a/dissertation.pdf b/dissertation.pdf index 5c0e730..57694f0 100644 Binary files a/dissertation.pdf and b/dissertation.pdf differ diff --git a/dissertation.tex b/dissertation.tex index 515c5e3..ca8fb47 100644 --- a/dissertation.tex +++ b/dissertation.tex @@ -24,17 +24,17 @@ Doctor of Philosophy \\ \vspace{40 pt} at the \\ UNIVERSITY OF WISCONSIN - MADISON \\ -20xx \\ -\vspace{200 pt} +2018 \\ \end{centering} -\noindent Date of final oral examination: xx/xx/xxxx \\ +\vfill + +\noindent Date of final oral examination: April 23, 2018 \\ This dissertation is approved by the following members of the Final Oral Committee: \\ \-\hspace{1cm} John C. Wright, Professor, Analytical Chemistry \\ -\-\hspace{1cm} x \\ -\-\hspace{1cm} x \\ -\-\hspace{1cm} x \\ -\-\hspace{1cm} x \\ +\-\hspace{1cm} Randall Goldsmith, Professor, Analytical Chemistry \\ +\-\hspace{1cm} Tim Bertram, Professor, Analytical Chemistry \\ +\-\hspace{1cm} Kyoung-Shin Choi, Professor, Materials Chemistry \\ \pagenumbering{gobble} \cleardoublepage % TODO: remove page number diff --git a/mixed_domain/chapter.tex b/mixed_domain/chapter.tex index aad2be1..12b0278 100644 --- a/mixed_domain/chapter.tex +++ b/mixed_domain/chapter.tex @@ -85,7 +85,7 @@ shift (3PEPS) \cite{EmdeMichelF1998a, DeBoeijWimP1996a, DeBoeijWimP1995a, ChoMin These methods also include fully-coherent methods involving only coherences such as Stimulated Raman Spectroscopy (SRS) \cite{YoonSangwoon2005a, McCamantDavidW2005a}, Doubly Vibrationally Enhanced (DOVE) \cite{ZhaoWei1999a, ZhaoWei1999b, ZhaoWei2000a, MeyerKentA2003a, - DonaldsonPaulM2007a, DonaldsonPaulM2008a, FournierFrederic2008a}, + DonaldsonPaulMurray2007b, DonaldsonPaulMurray2008a, FournierFrederic2008a}, Triply Resonant Sum Frequency (TRSF) \cite{BoyleErinSelene2013a, BoyleErinSelene2013b, BoyleErinSelene2014a}, Sum Frequency Generation (SFG) \cite{LagutchevAlexi2007a}, Coherent Anti-Stokes Raman Spectroscopy (CARS) \cite{CarlsonRogerJ1990b, CarlsonRogerJ1990c, @@ -106,13 +106,13 @@ capabilities for measuring homogeneous and inhomogeneous broadening. % Although these experiments are typically described in the driven limit, \cite{GallagherSarahM1998a, FourkasJohnT1992a, FourkasJohnT1992b} many of the experiments involve pulse widths that are comparable to the widths of the system. \cite{MeyerKentA2003a, - DonaldsonPaulM2007a, PakoulevAndreiV2009a, ZhaoWei1999a, CzechKyleJonathan2015a, + DonaldsonPaulMurray2007b, PakoulevAndreiV2009a, ZhaoWei1999a, CzechKyleJonathan2015a, KohlerDanielDavid2014a} % MR-CMDS then becomes a mixed-domain experiment whereby resonances are characterized with marginal resolution in both frequency and time. % For example, DOVE spectroscopy involves three different pathways \cite{WrightJohnCurtis2003a} whose relative importance depends on the relative importance of FID and driven -responses. \cite{DonaldsonPaulM2010a} % +responses. \cite{DonaldsonPaulMurray2010a} % In the driven limit, the DOVE line shape depends on the difference between the first two pulse frequencies so the line shape has a diagonal character that mimics the effects of inhomogeneous broadening. % @@ -679,8 +679,8 @@ amplitudes at $t=0$ (driven) and at $t / \Delta_t=2$ (FID); amplitudes for all $\Omega_{fx}/\Delta_{\omega}$ values shown are comparable at $t=0$, but the lack of FID formation for $\Omega_{fx}/\Delta_{\omega}=\pm2$ manifests as a visibly disproportionate amplitude decay. % Many ultrafast spectroscopies take advantage of the latent FID to suppress non-resonant background, -improving signal to noise. \cite{LagutchevAlexi2007a, LagutchevAlexi2010a, DonaldsonPaulM2010a, - DonaldsonPaulM2008a} % +improving signal to noise. \cite{LagutchevAlexi2007a, LagutchevAlexi2010a, + DonaldsonPaulMurray2010a, DonaldsonPaulMurray2008a} % In driven experiments, the output frequency and line shape are fully constrained by the excitation beams. % @@ -863,8 +863,8 @@ As a result, the line shape acquires a diagonal character. % The changes in line shape seen in Fig. \ref{fig:pw1} have significant ramifications for the interpretations and strategies of MR-CMDS in the mixed domain. % Time-gating has been used to isolate the 2D spectra of a certain -time-ordering\cite{MeyerKentA2004a, PakoulevAndreiV2006a, DonaldsonPaulM2007a}, but here we show that -time-gating itself causes significant line shape changes to the isolated pathways. % +time-ordering\cite{MeyerKentA2004a, PakoulevAndreiV2006a, DonaldsonPaulMurray2007b}, but here we +show that time-gating itself causes significant line shape changes to the isolated pathways. % The phenomenon of time-gating can cause frequency and delay axes to become functional of each other in unexpected ways. % diff --git a/opa/chapter.tex b/opa/chapter.tex index ad3e0d2..a83eac5 100644 --- a/opa/chapter.tex +++ b/opa/chapter.tex @@ -1,3 +1,10 @@ \chapter{A robust, fully automated algorithm to collect high quality OPA tuning curves} -This chapter pasted from publication... \ No newline at end of file +\textit{Principle design features of the new EVV 2DIR optical delivery system include the + following: ... Pairs of motorized gimbal mount mirrors on each OPA to compensate beam pointing + changes ... Automated calibration of OPAs, delay stages and motorized mounts. + ---\textcite{DonaldsonPaulMurray2007a}} % page 313 + +This chapter pasted from publication... + +% DONALDSON HAS AUTOMATED OPA TUNING DOWN? \ No newline at end of file -- cgit v1.2.3