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author | Blaise Thompson <blaise@untzag.com> | 2019-01-22 03:28:24 -0600 |
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committer | Blaise Thompson <blaise@untzag.com> | 2019-01-22 03:28:24 -0600 |
commit | fda38508fbc660a8a2b83e6fe8fde3e5f39fae16 (patch) | |
tree | 5f1315a028e6c1cf80c404003604f72377be69a6 /public/index.html | |
parent | a174900154d1f54ced1a2916bda26e2978890f3b (diff) |
add JOSS publication
Diffstat (limited to 'public/index.html')
-rw-r--r-- | public/index.html | 75 |
1 files changed, 26 insertions, 49 deletions
diff --git a/public/index.html b/public/index.html index 717a3dc..293c8f6 100644 --- a/public/index.html +++ b/public/index.html @@ -12,7 +12,7 @@ <center> This is the html version of my <i>curriculum vitae</i>. <br> - You can also download a <a href="http://cv.blaise.zone/ThompsonBlaiseCV.pdf">PDF</a>.<br> + <!--You can also download a <a href="http://cv.blaise.zone/ThompsonBlaiseCV.pdf">PDF</a>.<br>--> Thanks for stopping by! —Blaise </center> @@ -107,6 +107,28 @@ For more information, see my thesis: <a href="https://drive.google.com/open?id=1 <ol reversed> <li> +<header><h3><a href="https://doi.org/10.21105/joss.01141">WrightTools: a Python package for multidimensional spectroscopy</a></h3> +<em> + Thompson, B. J.; + Sunden, K. F.; + Morrow, D. J.; + Kohler, D. D.; + and + Wright, J. C.; +</em><br> +The Journal of Open Source Software (2019) +<ul> + <li>Designed a python-based toolkit for multidimensional spectroscopy.</li> + <li>Single processing toolkit for wide variety of instrumental data, built to be extensible as more data-types become relevant.</li> + <li>Offers specialized interactions, such as transformations, that are particularly suited to multidmensional spectroscopy.</lii> + <li>Prior to JOSS publication, WrightTools directly enabled no fewer than eleven publications.</li> + <li>Fully open source project, with continuing development on <a href="https://github.com/wright-group/WrightTools">GitHub.</a></li> + <li>Central package used as a data management pipeline by other packages simulating and acquiring multidimensional spectra.</li> + <li>Complete, "living" documentation at <a href="http://wright.tools/">wright.tools</a>.</li> +</ul> +</li> + +<li> <header><h3><a href="https://pubs.acs.org/doi/10.1021/acs.jpca.8b07678">Three Dimensional Triply Resonant Sum Frequency Spectroscopy Revealing Vibronic Coupling in Cobalamins: Toward a Probe of Reaction Coordinates</a></h3> <em> Handali, J. D.; @@ -136,6 +158,9 @@ The Journal of Physical Chemistry A (2018) </em><br> The Journal of Physical Chemistry C (2018) <ul> + <li>Extracted the quantitative third-order susceptibility of PbSe quantum dots through a method of standard dilution.</li> + <li>After accounting for differences in pulse width and experimental geometry, we find agreement between our measured susceptibility and prior measurements.</li> + <li>Our internal standard methodology should be generally applicable to nonlinear spectroscopy.</li> <li>Raw data and code freely available on the <a href="https://osf.io/3vprb/">open science framework.</a></li> </ul> </li> @@ -294,54 +319,6 @@ Madison, WI USA </ol> -<h2 id="projects"><span>PROJECTS</span></h2> - -<header><h3><p> - <span>Creator: <a href="http://wright.tools">WrightTools</a></span> - <span>2014-Present</span> -</p></h3> -<em>Tools for loading, processing, and plotting multidimensional spectroscopy data.</em> -<ul> - <li>Single processing toolkit for wide variety of instrumental data, built to be extensible as more data-types become relevant.</li> - <li>Offers specialized interactions, such as transformations, that are particularly suited to multidmensional spectroscopy.</li> - <li>Online documentation through Spinx and ReadTheDocs.</li> - <li>Project managed with several graduate students and undergraduate contributors, active issue tracking, version control and an extensive testing suite.</li> - <li>Central package used as a data management pipeline by other packages simulating and acquiring multidimensional spectra.</li> -</ul> - -<header><h3><p> - <span>Creator: <a href="https://github.com/wright-group/PyCMDS">PyCMDS</a></span> - <span>2015-Present</span> -</p></h3> -<em>Software for controlling hardware and collecting data in the Wright Group.</em> -<ul> - <li>Supplies modular hardware control, calibration, and orchestration during complex, long-lasting CMDS experiments.</li> - <li>Provides interface to optomechanical hardware from a variety of manufacturers, including National Instruments, Thorlabs, Horiba, Newport, and Aerotech. Also controls hardware built and customized in-house.</li> - <li>Focuses on seamless user experience with integrations such as automatic data backup and notification via Slack.</li> - <li>In conjunction with contemporaneous hardware improvements, algorithmic improvements in acquisition strategy increased scan rate by up to two orders of magnitude over prevous software.</li> -</ul> - -<header><h3><p> - <span>Co-creator: <a href="https://github.com/wright-group/WrightSim">WrightSim</a></span> - <span>2017-Present</span> -</p></h3> -<em>Efficient, flexable simulation package for multidimensional spectroscopy.</em> -<ul> - <li>Uses Liouville's theorem to numerically simulate nonlinear spectroscopy.</li> - <li>See also <a href="https://github.com/wright-group/NISE">NISE</a>, the predecessor of WrightSim.</li> -</ul> - -<header><h3><p> - <span>Contributor: <a href="https://github.com/dib-lab/osf-cli">osfclient</a></span> - <span>2017</span> -</p></h3> -<em>A Python library and command-line client for file storage within the Open Science Framework.</em> -<ul> - <li>Added Windows functionality, assisted in various debugging efforts in early version of osfcli.</li> - <li>Distribute on conda-forge.</li> -</ul> - - <h2 id="teaching"><span>TEACHING EXPERIENCE</span></h2> <header><h3><p> |