aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorBlaise Thompson <blaise@untzag.com>2019-01-22 03:28:24 -0600
committerBlaise Thompson <blaise@untzag.com>2019-01-22 03:28:24 -0600
commitfda38508fbc660a8a2b83e6fe8fde3e5f39fae16 (patch)
tree5f1315a028e6c1cf80c404003604f72377be69a6
parenta174900154d1f54ced1a2916bda26e2978890f3b (diff)
add JOSS publication
-rw-r--r--public/index.html75
1 files changed, 26 insertions, 49 deletions
diff --git a/public/index.html b/public/index.html
index 717a3dc..293c8f6 100644
--- a/public/index.html
+++ b/public/index.html
@@ -12,7 +12,7 @@
<center>
This is the html version of my <i>curriculum vitae</i>. <br>
- You can also download a <a href="http://cv.blaise.zone/ThompsonBlaiseCV.pdf">PDF</a>.<br>
+ <!--You can also download a <a href="http://cv.blaise.zone/ThompsonBlaiseCV.pdf">PDF</a>.<br>-->
Thanks for stopping by! &mdash;Blaise
</center>
@@ -107,6 +107,28 @@ For more information, see my thesis: <a href="https://drive.google.com/open?id=1
<ol reversed>
<li>
+<header><h3><a href="https://doi.org/10.21105/joss.01141">WrightTools: a Python package for multidimensional spectroscopy</a></h3>
+<em>
+ Thompson, B. J.;
+ Sunden, K. F.;
+ Morrow, D. J.;
+ Kohler, D. D.;
+ and
+ Wright, J. C.;
+</em><br>
+The Journal of Open Source Software (2019)
+<ul>
+ <li>Designed a python-based toolkit for multidimensional spectroscopy.</li>
+ <li>Single processing toolkit for wide variety of instrumental data, built to be extensible as more data-types become relevant.</li>
+ <li>Offers specialized interactions, such as transformations, that are particularly suited to multidmensional spectroscopy.</lii>
+ <li>Prior to JOSS publication, WrightTools directly enabled no fewer than eleven publications.</li>
+ <li>Fully open source project, with continuing development on <a href="https://github.com/wright-group/WrightTools">GitHub.</a></li>
+ <li>Central package used as a data management pipeline by other packages simulating and acquiring multidimensional spectra.</li>
+ <li>Complete, "living" documentation at <a href="http://wright.tools/">wright.tools</a>.</li>
+</ul>
+</li>
+
+<li>
<header><h3><a href="https://pubs.acs.org/doi/10.1021/acs.jpca.8b07678">Three Dimensional Triply Resonant Sum Frequency Spectroscopy Revealing Vibronic Coupling in Cobalamins: Toward a Probe of Reaction Coordinates</a></h3>
<em>
Handali, J. D.;
@@ -136,6 +158,9 @@ The Journal of Physical Chemistry A (2018)
</em><br>
The Journal of Physical Chemistry C (2018)
<ul>
+ <li>Extracted the quantitative third-order susceptibility of PbSe quantum dots through a method of standard dilution.</li>
+ <li>After accounting for differences in pulse width and experimental geometry, we find agreement between our measured susceptibility and prior measurements.</li>
+ <li>Our internal standard methodology should be generally applicable to nonlinear spectroscopy.</li>
<li>Raw data and code freely available on the <a href="https://osf.io/3vprb/">open science framework.</a></li>
</ul>
</li>
@@ -294,54 +319,6 @@ Madison, WI USA
</ol>
-<h2 id="projects"><span>PROJECTS</span></h2>
-
-<header><h3><p>
- <span>Creator: <a href="http://wright.tools">WrightTools</a></span>
- <span>2014-Present</span>
-</p></h3>
-<em>Tools for loading, processing, and plotting multidimensional spectroscopy data.</em>
-<ul>
- <li>Single processing toolkit for wide variety of instrumental data, built to be extensible as more data-types become relevant.</li>
- <li>Offers specialized interactions, such as transformations, that are particularly suited to multidmensional spectroscopy.</li>
- <li>Online documentation through Spinx and ReadTheDocs.</li>
- <li>Project managed with several graduate students and undergraduate contributors, active issue tracking, version control and an extensive testing suite.</li>
- <li>Central package used as a data management pipeline by other packages simulating and acquiring multidimensional spectra.</li>
-</ul>
-
-<header><h3><p>
- <span>Creator: <a href="https://github.com/wright-group/PyCMDS">PyCMDS</a></span>
- <span>2015-Present</span>
-</p></h3>
-<em>Software for controlling hardware and collecting data in the Wright Group.</em>
-<ul>
- <li>Supplies modular hardware control, calibration, and orchestration during complex, long-lasting CMDS experiments.</li>
- <li>Provides interface to optomechanical hardware from a variety of manufacturers, including National Instruments, Thorlabs, Horiba, Newport, and Aerotech. Also controls hardware built and customized in-house.</li>
- <li>Focuses on seamless user experience with integrations such as automatic data backup and notification via Slack.</li>
- <li>In conjunction with contemporaneous hardware improvements, algorithmic improvements in acquisition strategy increased scan rate by up to two orders of magnitude over prevous software.</li>
-</ul>
-
-<header><h3><p>
- <span>Co-creator: <a href="https://github.com/wright-group/WrightSim">WrightSim</a></span>
- <span>2017-Present</span>
-</p></h3>
-<em>Efficient, flexable simulation package for multidimensional spectroscopy.</em>
-<ul>
- <li>Uses Liouville's theorem to numerically simulate nonlinear spectroscopy.</li>
- <li>See also <a href="https://github.com/wright-group/NISE">NISE</a>, the predecessor of WrightSim.</li>
-</ul>
-
-<header><h3><p>
- <span>Contributor: <a href="https://github.com/dib-lab/osf-cli">osfclient</a></span>
- <span>2017</span>
-</p></h3>
-<em>A Python library and command-line client for file storage within the Open Science Framework.</em>
-<ul>
- <li>Added Windows functionality, assisted in various debugging efforts in early version of osfcli.</li>
- <li>Distribute on conda-forge.</li>
-</ul>
-
-
<h2 id="teaching"><span>TEACHING EXPERIENCE</span></h2>
<header><h3><p>