1 files changed, 75 insertions, 0 deletions
diff --git a/PbSe_global_analysis/run.sh b/PbSe_global_analysis/run.sh
new file mode 100755
index 0000000..a38e6ff
--- /dev/null
+++ b/PbSe_global_analysis/run.sh
@@ -0,0 +1,75 @@
+set -e  # force exit upon error
+
+function printColor {
+  YELLOW='\033[0;33m'
+  NC='\033[0m' # No Color
+  printf "${YELLOW}$*${NC}\n"
+}
+
+function printLine {
+  printColor "%`tput cols`s"|tr ' ' '#'
+}
+
+function printThenPython {
+  printColor "python $*"
+  python "$*"
+}
+
+if [[ $# -eq 0 ]] ; then
+    echo 'please provide an argument in [data, simulations, figures, documents, all]'
+    exit 1
+fi
+
+# process data
+if [[ "$1" = "all" ]] || [[ "$1" = "data" ]] ; then
+  printLine
+  printColor data
+  printThenPython "data/TA A.py"
+  printThenPython "data/TA B.py"
+  printThenPython "data/TG A.py"
+  printThenPython "data/TG B.py"  
+fi
+
+# run simulations
+if [[ "$1" = "all" ]] || [[ "$1" = "simulations" ]] ; then
+  printLine
+  printColor simulations
+  #printThenPython "simulations/fit fsb19.py"
+  #printThenPython "simulations/fit fsb25.py"
+fi
+
+# make figures
+if [[ "$1" = "all" ]] || [[ "$1" = "figures" ]] ; then
+  printLine
+  printColor figures
+  printThenPython "figures/absorbance.py"
+  printThenPython "figures/kramers_kronig.py"
+  printThenPython "figures/m_factors.py"
+  #printThenPython "figures/movies_fitted.py"
+  printThenPython "figures/movies_combined.py"
+  printThenPython "figures/power_factors.py"
+  #printThenPython "figures/driven_initial.py"
+  printThenPython "figures/TA_artifacts.py"
+  printThenPython "figures/TG_artifacts.py"
+  printThenPython "figures/ta_vs_tg.py"
+fi
+
+# render documents
+if [[ "$1" = "all" ]] || [[ "$1" = "documents" ]] ; then
+  printLine
+  printColor documents
+  # main
+  printColor main
+  pdflatex --interaction=nonstopmode main
+  bibtex main
+  pdflatex --interaction=nonstopmode main
+  pdflatex --interaction=nonstopmode main
+  # SI
+  printColor SI
+  pdflatex --interaction=nonstopmode SI
+  biber SI
+  pdflatex --interaction=nonstopmode SI
+  pdflatex --interaction=nonstopmode SI
+fi
+
+printColor finished