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diff --git a/software/chapter.tex b/software/chapter.tex
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+++ b/software/chapter.tex
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-% TODO: add StoddenVictoria2016.000 (Enhancing reproducibility for computational methods)

-% TODO: add MillmanKJarrod2011.000 (Python for Scientists and Engineers)

-% TODO: add vanderWaltStefan2011.000 (The NumPy Array: A Structure for Efficient Numerical Computation)

+% TODO: add StoddenVictoria2016a (Enhancing reproducibility for computational methods)

+% TODO: add MillmanKJarrod2011a (Python for Scientists and Engineers)

+% TODO: add vanderWaltStefan2011a (The NumPy Array: A Structure for Efficient Numerical Computation)

 % TODO: reference https://www.nsf.gov/pubs/2016/nsf16532/nsf16532.htm (Software Infrastructure for Sustained Innovation (SI2: SSE & SSI))

 

 \chapter{Software}

 

-Cutting-edge science increasingly relies on custom software. In their 2008 survey, \textcite{HannayJoErskine2009.000} demonstrated just how important software is to the modern scientist.

+Cutting-edge science increasingly relies on custom software. In their 2008 survey, \textcite{HannayJoErskine2009a} demonstrated just how important software is to the modern scientist.

 \begin{enumerate}[topsep=-1.5ex, itemsep=0ex, partopsep=0ex, parsep=0ex, label=$\rightarrow$]

 	\item 84.3\% of surveyed scientists state that developing scientific software is important or very important for their own research.

 	\item 91.2\% of surveyed scientists state that using scientific software is important or very important for their own research.

@@ -14,10 +14,10 @@ Cutting-edge science increasingly relies on custom software. In their 2008 surve
 \end{enumerate}

 Despite the importance of software to science and scientists, most scientists are not familiar with basic software engineering concepts.

 % TODO: demonstrate that `most scientists are not familiar with basic software engineering concepts'

-This is in part due to the their general lack of formal training in programming and software development. \textcite{HannayJoErskine2009.000} found that over 90\% of scientists learn software development through `informal self study'. Indeed, I myself have never been formally trained in software development.

+This is in part due to the their general lack of formal training in programming and software development. \textcite{HannayJoErskine2009a} found that over 90\% of scientists learn software development through `informal self study'. Indeed, I myself have never been formally trained in software development.

 

-Software development in a scientific context poses unique challenges. Many traditional software development paradigms demand an upfront articulation of goals and requirements. This allows the developers to carefully design their software, even before a single line of code is written. In her seminal 2005 case study \textcite{SegalJudith2005.000} describes a collaboration between a team of researchers and a contracted team of software engineers. Ultimately 

-% TODO: finish the discussion of SegalJudith2005.000

+Software development in a scientific context poses unique challenges. Many traditional software development paradigms demand an upfront articulation of goals and requirements. This allows the developers to carefully design their software, even before a single line of code is written. In her seminal 2005 case study \textcite{SegalJudith2005a} describes a collaboration between a team of researchers and a contracted team of software engineers. Ultimately 

+% TODO: finish the discussion of SegalJudith2005a

 % TODO: segue to reccomendation of agile development practices: http://agilemanifesto.org/

 

 \section{Overview}