2018-04-07 20:08

1 files changed, 93 insertions, 25 deletions

diff --git a/bibliography.bib b/bibliography.bib
index f3d001a..0859f66 100644
--- a/bibliography.bib
+++ b/bibliography.bib
@@ -1,16 +1,3 @@
-@article{MurdochKiethM2000a,

-  author =       {Keith M. Murdoch and David E. Thompson and Kent A. Meyer and John C. Wright},

-  title =        {Modeling Window Contributions to Four-Wave Mixing Spectra and Measurements of

-                  Third-Order Optical Susceptibilities},

-  journal =      {Appl. Spectrosc.},

-  volume =       54,

-  number =       10,

-  pages =        {1495--1505},

-  year =         2000,

-  month =        {Oct},

-  publisher =    {OSA},

-}

-

 @article{AartsmaThijsJ1976a,

   author =       {Aartsma, Thijs J and Wiersma, Douwe A},

   title =        {{Photon-echo relaxation in molecular mixed crystals}},

@@ -268,6 +255,14 @@
   publisher =    {Institute of Electrical and Electronics Engineers ({IEEE})},

 }

 

+@phdthesis{CarlsonRogerJohn1988a,

+  author =       {Roger John Carlson},

+  school =       {University of Wisconsin-Madison},

+  title =        {Quantitative Aspects of High Resolution, Fully Resonant, Four-Wave Mixing

+                  Spectroscopy For the Analysis of Vibronic Mode Coupling in Molecules},

+  year =         1988,

+}

+

 @article{CarlsonRogerJohn1989a,

   author =       {Roger J. Carlson and John C. Wright},

   title =        {Absorption and Coherent Interference Effects in Multiply Resonant Four-Wave

@@ -339,14 +334,6 @@
   month =        {jul},

 }

 

-@phdthesis{CarlsonRogerJohn1988a,

-  author =       {Roger John Carlson},

-  school =       {University of Wisconsin-Madison},

-  title =        {Quantitative Aspects of High Resolution, Fully Resonant, Four-Wave Mixing

-                  Spectroscopy For the Analysis of Vibronic Mode Coupling in Molecules},

-  year =         1988,

-}

-

 @inproceedings{CarverJeffreyC2007a,

   author =       {Jeffrey C. Carver and Richard P. Kendall and Susan E. Squires and Douglass E.

                   Post},

@@ -784,7 +771,6 @@ year = {1998}
   month =        {aug},

 }

 

-

 @article{GelinMaximF2005a,

   author =       {Gelin, Maxim F. and Egorova, Dassia and Domcke, Wolfgang},

   title =        {{Efficient method for the calculation of time- and frequency-resolved four-wave

@@ -836,6 +822,12 @@ year = {1998}
   url =          {https://github.com/},

 }

 

+@misc{GitLab,

+  note =         {Accessed: 2018-04-07},

+  title =        {The only single product for the complete DevOps lifecycle - GitLab},

+  url =          {https://about.gitlab.com/},

+}

+

 @article{GriffinGrahamB2013a,

   author =       {Graham B. Griffin and Sandrine Ithurria and Dmitriy S. Dolzhnikov and Alexander

                   Linkin and Dmitri V. Talapin and Gregory S. Engel},

@@ -851,6 +843,7 @@ year = {1998}
   publisher =    {{AIP} Publishing},

 }

 

+

 @article{HammPeter1999a,

   author =       {Hamm, Peter and Lim, Manho and DeGrado, W. F. and Hochstrasser, Robin M},

   title =        {{The two-dimensional IR nonlinear spectroscopy of a cyclic penta-peptide in

@@ -1009,6 +1002,21 @@ year = {1998}
   pmid =         19745871,

 }

 

+@article{JoppaLucasN2013a,

+  author =       {Joppa, Lucas N. and McInerny, Greg and Harper, Richard and Salido, Lara and

+                  Takeda, Kenji and O{\textquoteright}Hara, Kenton and Gavaghan, David and Emmott,

+                  Stephen},

+  title =        {Troubling Trends in Scientific Software Use},

+  journal =      {Science},

+  volume =       340,

+  number =       6134,

+  pages =        {814--815},

+  year =         2013,

+  doi =          {10.1126/science.1231535},

+  issn =         {0036-8075},

+  publisher =    {American Association for the Advancement of Science},

+}

+

 @book{KahnemanDaniel2013a,

 	author = {Kahneman, Daniel},

 	title = {Thinking, Fast and Slow},

@@ -1016,6 +1024,7 @@ year = {1998}
 	publisher = {Farrar, Straus and Giroux},

 	isbn = {9780374533557},

 }

+

 @article{KambhampatiPatanjali2011a,

   author =       {Patanjali Kambhampati},

   title =        {Unraveling the Structure and Dynamics of Excitons in

@@ -1074,7 +1083,6 @@ year = {1998}
   month =        {mar},

   publisher =    {American Chemical Society ({ACS})},

 }

-

 @article{KohlerDanielDavid2017a,

   author =       {Daniel D. Kohler and Blaise J. Thompson and John C. Wright},

   title =        {Frequency-domain coherent multidimensional spectroscopy when dephasing rivals

@@ -1416,6 +1424,19 @@ year = {1998}
   publisher =    {{IEEE} Comput. Soc},

 }

 

+@article{MurdochKiethM2000a,

+  author =       {Keith M. Murdoch and David E. Thompson and Kent A. Meyer and John C. Wright},

+  title =        {Modeling Window Contributions to Four-Wave Mixing Spectra and Measurements of

+                  Third-Order Optical Susceptibilities},

+  journal =      {Appl. Spectrosc.},

+  volume =       54,

+  number =       10,

+  pages =        {1495--1505},

+  year =         2000,

+  month =        {Oct},

+  publisher =    {OSA},

+}

+

 @article{NieZhaogang2014a,

   author =       {Zhaogang Nie and Run Long and Linfeng Sun and Chung-Che Huang

                   and Jun Zhang and Qihua Xiong and Daniel W. Hewak and Zexiang

@@ -1672,6 +1693,17 @@ year = {1998}
   pmid =         1463575,

 }

 

+@inproceedings{PrabhuPrakash2011a,

+  author =       {Prakash Prabhu and Yun Zhang and Soumyadeep Ghosh and David I. August and Jialu

+                  Huang and Stephen Beard and Hanjun Kim and Taewook Oh and Thomas B. Jablin and

+                  Nick P. Johnson and Matthew Zoufaly and Arun Raman and Feng Liu and David Walker},

+  title =        {A survey of the practice of computational science},

+  booktitle =    {State of the Practice Reports on - {SC} {\textquotesingle}11},

+  year =         2011,

+  doi =          {10.1145/2063348.2063374},

+  publisher =    {{ACM} Press},

+}

+

 @inproceedings{PrabuPrakash2011a,

   author =       {Prakash Prabhu and Yun Zhang and Soumyadeep Ghosh and David I. August and Jialu

                   Huang and Stephen Beard and Hanjun Kim and Taewook Oh and Thomas B. Jablin and

@@ -1753,6 +1785,13 @@ year = {1998}
   journal = {Physical Review A}

 }

 

+@misc{SI2,

+  note =         {Accessed: 2018-04-07},

+  title =        {A Vision and Strategy for Software for Science, Engineering and Education:

+                  Cyberinfrastrure Framework for the 21st Century},

+  url =          {https://www.nsf.gov/pubs/2012/nsf12113/nsf12113.pdf},

+}

+

 @article{SalcedoJR1978a,

   author =       {Salcedo, J R and Siegman, A E and Dlott, D D and Fayer, M D},

   title =        {{Dynamics of Energy Transport in Molecular Crystals: The Picosecond

@@ -1783,6 +1822,20 @@ year = {1998}
   month =        {jun},

 }

 

+@article{SandersRebecca2008a,

+  author =       {R. Sanders and D. Kelly},

+  title =        {Dealing with Risk in Scientific Software Development},

+  journal =      {IEEE Software},

+  volume =       25,

+  pages =        {21-28},

+  year =         2008,

+  doi =          {10.1109/MS.2008.84},

+  ISSN =         {0740-7459},

+  keywords =     {Professional end-user developer; scientific application software; software

+                  development; software testing; empirical study},

+  month =        07,

+}

+

 @article{SchweigertIgorV2008a,

   author =       {Schweigert, Igor V. and Mukamel, Shaul},

   title =        {{Simulating multidimensional optical wave-mixing signals with finite-pulse

@@ -2125,6 +2178,21 @@ year = {1998}
   publisher =    {Foundation for Open Access Statistics},

 }

 

+@article{WilsonGreg2006a,

+  ISSN =         {1521-9615},

+  author =       {G. Wilson},

+  doi =          {10.1109/MCSE.2006.122},

+  journal =      {Computing in Science & Engineering},

+  keywords =     {physics education; computation in undergraduate education; continuing education;

+                  software engineering},

+  month =        11,

+  pages =        {66-69},

+  title =        {Software Carpentry: Getting Scientists to Write Better Code by Making Them More

+                  Productive},

+  volume =       8,

+  year =         2006,

+}

+

 @article{WilsonGreg2017a,

   author =       {Greg Wilson and Jennifer Bryan and Karen Cranston and Justin Kitzes and Lex

                   Nederbragt and Tracy K. Teal},

@@ -2169,6 +2237,7 @@ year = {1998}
   month =        {oct},

 }

 

+

 @article{WrightJohnCurtis1997a,

   author =       {Wright, John C.},

   title =        {{New selective nonlinear vibrational spectroscopies}},

@@ -2182,7 +2251,6 @@ year = {1998}
   month =        {jun},

 }

 

-

 @article{WrightJohnCurtis1997b,

   author =       {Wright, John C. and Chen, Peter C. and Hamilton, James P. and Zilian, Arne and

                   Labuda, Mitchell J.},

@@ -2402,13 +2470,13 @@ year = {1998}
   url =          {https://git.chem.wisc.edu/},

 }

 

+

 @misc{h5py,

   note =         {Accessed: 2018-04-04},

   title =        {h5py: HDF5 for Python},

   url =          {https://www.h5py.org/},

 }

 

-

 @misc{h5py.Group,

   note =         {Accessed: 2018-03-25},

   title =        {h5py Groups documentation.},