2018-04-18 19:44

2 files changed, 307 insertions, 49 deletions

diff --git a/todo.org b/todo.org
index 9cc5e61..e69de29 100644
--- a/todo.org
+++ b/todo.org
@@ -1,49 +0,0 @@
-* TODO more references for object oriented programming                  :sof:
-** in inbox
-* IDEA incorporate StoddenVictoria2016a                                 :sof:
-* IDEA incorporate idea "most people over-trust software"               :sof:
-* IDEA consider refactoring or expanding OOP section                    :sof:
-* TODO summary paragraphs in introduction                               :pro:
-* TODO finish discussing interpolation types                            :pro:
-** TODO describe figure
-* TODO specialty artists                                                :pro:
-* TODO artist API                                                       :pro:
-* TODO gotchas (figures from czech...)                                  :pro:
-* TODO axes content                                                     :pro:
-* TODO level                                                            :pro:
-* TODO tables                                                           :pro:
-* TODO finish describing function objects                               :pro:
-* TODO describe continuous integration                                  :pro:
-* TODO describe readthedocs documentation                               :pro:
-* TODO future directions                                                :pro:
-* TODO figure captions                                                  :pro:
-* TODO acquisition modules                                              :acq:
-* TODO conditional validity                                             :acq:
-* TODO integrations                                                     :acq:
-* TODO future directions cleanup                                        :acq:
-* TODO Hardware is not subclassed                                       :acq:
-* TODO figure captions                                                  :acq:
-* IDEA dates on screenshots                                             :acq:
-* IDEA equation from skye re: array detector                            :acq:
-* TODO introduction paragraphs                                          :act:
-* TODO spectral delay correction                                        :act:
-* TODO poynting correction                                              :act:
-* TODO chopping (minimal)                                               :act:
-* TODO fibrillation (minimal)                                           :act:
-* TODO conclusions                                                      :act:
-* TODO figure captions                                                  :act:
-* IDEA excitation power correction                                      :act:
-* IDEA 2D delay example from ps system                                  :act:
-* DONE insert flowcharts                                                :opa:
-  CLOSED: [2018-04-12 Thu 11:21]
-* TODO introduction to TOPAS-C                                          :opa:
-* TODO preamp                                                           :opa:
-* TODO poweramp                                                         :opa:
-* TODO mixers                                                           :opa:
-* TODO generalizability                                                 :opa:
-* TODO future directions                                                :opa:
-* TODO figure captions                                                  :opa:
-* IDEA insert content from SI                                           :mix:
-* IDEA insert content from SI                                           :psg:
-* TODO verify all references                                         :polish:
-* TODO read through and make links where appropriate                 :polish:
diff --git a/todo.org_archive b/todo.org_archive
index cf123b0..2b03d6a 100644
--- a/todo.org_archive
+++ b/todo.org_archive
@@ -157,3 +157,310 @@ Archived entries from file /home/blaise/source/dissertation/todo.org
   :ARCHIVE_CATEGORY: todo
   :ARCHIVE_TODO: DONE
   :END:
+
+* DONE insert flowcharts                                                :opa:
+  CLOSED: [2018-04-12 Thu 11:21]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE introduction to TOPAS-C                                                                :opa:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE preamp                                                                                 :opa:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE poweramp                                                                               :opa:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE mixers                                                                                 :opa:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE generalizability                                                                       :opa:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE future directions                                                                      :opa:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE figure captions                                                                        :opa:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:55
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE figure captions                                                                        :act:
+  CLOSED: [2018-04-17 Tue 22:55]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:56
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE figure captions                                                                        :acq:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:56
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE level                                                                                  :pro:
+  CLOSED: [2018-04-17 Tue 22:57]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE tables                                                                                 :pro:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE finish describing function objects                                                     :pro:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE describe continuous integration                                                        :pro:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE describe readthedocs documentation                                                     :pro:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE future directions                                                                      :pro:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE conditional validity                                                                   :acq:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE integrations                                                                           :acq:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* DONE future directions cleanup                                                              :acq:
+  CLOSED: [2018-04-17 Tue 22:56]
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: DONE
+  :END:
+
+* TODO chopping (minimal)                                               :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* TODO fibrillation (minimal)                                           :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* TODO conclusions                                                      :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* IDEA excitation power correction                                      :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* IDEA 2D delay example from ps system                                  :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* IDEA insert content from SI                                           :mix:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* IDEA insert content from SI                                           :psg:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* TODO verify all references                                         :polish:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* TODO read through and make links where appropriate                 :polish:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* TODO poynting correction                                              :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* TODO spectral delay correction                                        :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* TODO introduction paragraphs                                          :act:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: TODO
+  :END:
+
+* IDEA equation from skye re: array detector                            :acq:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* IDEA dates on screenshots                                             :acq:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* IDEA consider refactoring or expanding OOP section                    :sof:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* IDEA incorporate idea "most people over-trust software"               :sof:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END:
+
+* IDEA incorporate StoddenVictoria2016a                                 :sof:
+  :PROPERTIES:
+  :ARCHIVE_TIME: 2018-04-17 Tue 22:57
+  :ARCHIVE_FILE: ~/source/dissertation/todo.org
+  :ARCHIVE_CATEGORY: todo
+  :ARCHIVE_TODO: IDEA
+  :END: