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path: root/PbSe_global_analysis/run.sh
blob: a38e6ffedc935d6be005a9c5e3147178fc0f0614 (plain)
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set -e  # force exit upon error

function printColor {
  YELLOW='\033[0;33m'
  NC='\033[0m' # No Color
  printf "${YELLOW}$*${NC}\n"
}

function printLine {
  printColor "%`tput cols`s"|tr ' ' '#'
}

function printThenPython {
  printColor "python $*"
  python "$*"
}

if [[ $# -eq 0 ]] ; then
    echo 'please provide an argument in [data, simulations, figures, documents, all]'
    exit 1
fi

# process data
if [[ "$1" = "all" ]] || [[ "$1" = "data" ]] ; then
  printLine
  printColor data
  printThenPython "data/TA A.py"
  printThenPython "data/TA B.py"
  printThenPython "data/TG A.py"
  printThenPython "data/TG B.py"  
fi

# run simulations
if [[ "$1" = "all" ]] || [[ "$1" = "simulations" ]] ; then
  printLine
  printColor simulations
  #printThenPython "simulations/fit fsb19.py"
  #printThenPython "simulations/fit fsb25.py"
fi

# make figures
if [[ "$1" = "all" ]] || [[ "$1" = "figures" ]] ; then
  printLine
  printColor figures
  printThenPython "figures/absorbance.py"
  printThenPython "figures/kramers_kronig.py"
  printThenPython "figures/m_factors.py"
  #printThenPython "figures/movies_fitted.py"
  printThenPython "figures/movies_combined.py"
  printThenPython "figures/power_factors.py"
  #printThenPython "figures/driven_initial.py"
  printThenPython "figures/TA_artifacts.py"
  printThenPython "figures/TG_artifacts.py"
  printThenPython "figures/ta_vs_tg.py"
fi

# render documents
if [[ "$1" = "all" ]] || [[ "$1" = "documents" ]] ; then
  printLine
  printColor documents
  # main
  printColor main
  pdflatex --interaction=nonstopmode main
  bibtex main
  pdflatex --interaction=nonstopmode main
  pdflatex --interaction=nonstopmode main
  # SI
  printColor SI
  pdflatex --interaction=nonstopmode SI
  biber SI
  pdflatex --interaction=nonstopmode SI
  pdflatex --interaction=nonstopmode SI
fi

printColor finished