diff options
| -rw-r--r-- | acquisition/chapter.tex | 8 | ||||
| -rw-r--r-- | dissertation.tex | 16 | ||||
| -rw-r--r-- | spectroscopy/auto/chapter.el | 1 | ||||
| -rw-r--r-- | spectroscopy/chapter.tex | 8 | ||||
| -rw-r--r-- | todo.org | 80 | ||||
| -rw-r--r-- | todo.org_archive | 78 |
6 files changed, 137 insertions, 54 deletions
diff --git a/acquisition/chapter.tex b/acquisition/chapter.tex index df1c887..d997e44 100644 --- a/acquisition/chapter.tex +++ b/acquisition/chapter.tex @@ -891,13 +891,7 @@ Conceptually, can imagine a 4 quadrant system. % Thus PyCMDS can be proud to try and generalize the hardware-complex part of acquisition software
because indeed that is all that can be generalized. %
-\begin{figure}
- \caption{
- CAPTION TODO: 4 QUADRANTS OF COMPLEXITY
- }
- \label{aqn:fig:complexity_quandrants}
-\end{figure}
-
+\clearpage
\section{Integrations} % =========================================================================
[GOOGLE DRIVE]
diff --git a/dissertation.tex b/dissertation.tex index 29b092a..a38db68 100644 --- a/dissertation.tex +++ b/dissertation.tex @@ -68,17 +68,17 @@ This dissertation is approved by the following members of the Final Oral Committ \include{software/chapter} % sof
\part{Development} \label{prt:development}
-%\include{processing/chapter} % pro
+\include{processing/chapter} % pro
\include{acquisition/chapter} % acq
-%\include{active_correction/chapter} % act
-%\include{opa/chapter} % opa
-%\include{mixed_domain/chapter}
+\include{active_correction/chapter} % act
+\include{opa/chapter} % opa
+\include{mixed_domain/chapter}
\part{Applications} \label{prt:applications}
-%\include{PbSe_susceptibility/chapter}
-%\include{PbSe_global_analysis/chapter}
-%\include{MX2/chapter}
-%\include{PEDOT_PSS/chapter}
+\include{PbSe_susceptibility/chapter}
+\include{PbSe_global_analysis/chapter}
+\include{MX2/chapter}
+\include{PEDOT_PSS/chapter}
% appendix -----------------------------------------------------------------------------------------
diff --git a/spectroscopy/auto/chapter.el b/spectroscopy/auto/chapter.el index 6fd7dd7..4966739 100644 --- a/spectroscopy/auto/chapter.el +++ b/spectroscopy/auto/chapter.el @@ -3,7 +3,6 @@ (lambda () (LaTeX-add-labels "cha:spc" - "spc:fig:decongestion" "spc:fig:power_curves")) :latex) diff --git a/spectroscopy/chapter.tex b/spectroscopy/chapter.tex index eb41d10..cdd3955 100644 --- a/spectroscopy/chapter.tex +++ b/spectroscopy/chapter.tex @@ -172,14 +172,6 @@ The most obvious advantage of multidimensional spectroscopy comes directly from itself. %
Multidimensional spectroscopy can \emph{decongest} spectra with overlapping peaks by isolating
peaks in a multidimensional resonance landscape. %
-Figure \ref{spc:fig:decongestion} shows...
-
-\begin{figure}
- \caption[Dimensionality and decongestion.]{
- CAPTION TODO.
- }
- \label{spc:fig:decongestion}
-\end{figure}
\subsection{Frequency vs time domain} % ----------------------------------------------------------
@@ -1,38 +1,58 @@ -* DONE draft challenges section :software: - CLOSED: [2018-04-05 Thu 09:12] -* DONE quote from RC :introduction: - CLOSED: [2018-04-07 Sat 11:20] -* DONE dichotomies :spectroscopy: - CLOSED: [2018-04-07 Sat 15:57] -* DONE citations :abstract: - CLOSED: [2018-04-07 Sat 16:47] -* DONE citations :introduction: - CLOSED: [2018-04-07 Sat 18:19] -* DONE finish intro to oop content :software: - CLOSED: [2018-04-07 Sat 23:19] -* DONE incorporate "most software is not peer reviewed" :software: - CLOSED: [2018-04-07 Sat 23:19] -** see Joppa reference 6 -* DONE incorporate all references :software: - CLOSED: [2018-04-07 Sat 23:19] -* TODO tables :processing: -* TODO distribution section :processing: -* TODO development history from github :processing: -* TODO development section :processing: -* TODO describe spectroscopic instrument :spectroscopy: -* TODO more references for object oriented programming :software: -* TODO "quadrants of complexity" idea :acquisition: -** TODO figure -** TODO arguments -* TODO insert content :PbSe: +* DONE distribution section :processing: + CLOSED: [2018-04-11 Wed 11:28] +* DONE development history from github :processing: + CLOSED: [2018-04-11 Wed 11:29] +* DONE development section :processing: + CLOSED: [2018-04-11 Wed 11:30] * TODO headers :introduction: * TODO cite important CMDS discoveries, reviews :introduction: +* TODO incorporate Nancy's comments :introduction: +* TODO incorporate Claire's comments :introduction: * TODO summarize PbSe chapter :introduction: * TODO summarize MX2 chapter :introduction: * TODO summarize PEDOT:PSS chapter :introduction: -* TODO insert content from SI :mixed_domain: +* TODO verify light-matter interaction content :spectroscopy: +* TODO finish instrumentation section (darien) :spectroscopy: +* IDEA linear vs multidimensional figure :spectroscopy: +* IDEA see Paul's dissertation re: loss of resonance advantage with very fast pulses :spectroscopy: +* TODO more references for object oriented programming :software: * IDEA incorporate StoddenVictoria2016a :software: * IDEA incorporate idea "most people over-trust software" :software: -* IDEA 2D delay example from ps system :active: * IDEA consider refactoring or expanding OOP section :software: -* IDEA see Paul's dissertation re: loss of resonance advantage with very fast pulses :spectroscopy: +* TODO summary paragraphs in introduction :processing: +* TODO finish discussing interpolation types :processing: +** TODO describe figure +* TODO specialty artists :processing: +* TODO artist API :processing: +* TODO gotchas (figures from czech...) :processing: +* TODO axes content :processing: +* TODO level :processing: +* TODO tables :processing: +* TODO finish describing function objects :processing: +* TODO describe continuous integration :processing: +* TODO describe readthedocs documentation :processing: +* TODO future directions :processing: +* TODO figure captions :processing: +* TODO flesh out introduction :acq: +* TODO show queue figure in GUI section :acq: +* TODO parents _are_ virtual hardware :acq: +* TODO hardware advanced panel descriptions :acq: +* TODO sensors section :acq: +* TODO autonomic SDC screenshot :acq: +* TODO acquisition modules :acq: +* TODO conditional validity :acq: +* TODO integrations :acq: +* TODO future directions cleanup :acq: +* TODO figure captions :acq: +* TODO introduction paragraphs :act: +* TODO spectral delay correction :act: +* TODO poynting correction :act: +* IDEA excitation power correction :act: +* TODO chopping (minimal) :act: +* TODO fibrillation (minimal) :act: +* TODO conclusions :act: +* TODO figure captions :act: +* TODO insert content :PbSe: +* TODO insert content from SI :mixed_domain: +* IDEA 2D delay example from ps system :active: +* TODO verify all references :polish: diff --git a/todo.org_archive b/todo.org_archive new file mode 100644 index 0000000..2949981 --- /dev/null +++ b/todo.org_archive @@ -0,0 +1,78 @@ +# -*- mode: org -*- + + +Archived entries from file /home/blaise/source/dissertation/todo.org + + +* DONE draft challenges section :software: + CLOSED: [2018-04-05 Thu 09:12] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: + +* DONE quote from RC :introduction: + CLOSED: [2018-04-07 Sat 11:20] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: + +* DONE dichotomies :spectroscopy: + CLOSED: [2018-04-07 Sat 15:57] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: + +* DONE citations :abstract: + CLOSED: [2018-04-07 Sat 16:47] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: + +* DONE citations :introduction: + CLOSED: [2018-04-07 Sat 18:19] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: + +* DONE finish intro to oop content :software: + CLOSED: [2018-04-07 Sat 23:19] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: + +* DONE incorporate "most software is not peer reviewed" :software: + CLOSED: [2018-04-07 Sat 23:19] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: +** see Joppa reference 6 + +* DONE incorporate all references :software: + CLOSED: [2018-04-07 Sat 23:19] + :PROPERTIES: + :ARCHIVE_TIME: 2018-04-11 Wed 11:18 + :ARCHIVE_FILE: ~/source/dissertation/todo.org + :ARCHIVE_CATEGORY: todo + :ARCHIVE_TODO: DONE + :END: |