2018-03-26 22:34

1 files changed, 15 insertions, 8 deletions

diff --git a/acquisition/chapter.tex b/acquisition/chapter.tex
index e3035a0..8e75cc1 100644
--- a/acquisition/chapter.tex
+++ b/acquisition/chapter.tex
@@ -1,7 +1,14 @@
-\chapter{Acquistion}

+\chapter{Acquistion} \label{cha:acq}

 

 % TODO: cool quote, if I can think of one

 

+\begin{dquote}

+  The question of software correctness ultimately boils down to, “Does it do what we have in our

+  minds, even the things we have not gotten around to thinking about yet?”

+

+  \dsignature{Alistair Cockburn}

+\end{dquote}

+

 \clearpage

 

 In the Wright Group, \gls{PyCMDS} replaces the old acquisition softwares `ps control', written by

@@ -13,15 +20,15 @@ PyCMDS directly addresses the hardware during experiments.
 

 PyCMDS has, through software improvements alone, dramatically lessened scan times...

 

-\begin{itemize}[topsep=-1.5ex, itemsep=0ex, partopsep=0ex, parsep=0ex, label=$\rightarrow$]

-	\item simultaneous motor motion

+\begin{ditemize}

+  \item simultaneous motor motion

 	\item digital signal processing  % TODO: reference section when it exists

-	\item ideal axis positions \ref{sec:ideal_axis_positions}

-\end{itemize}

+	\item ideal axis positions \ref{acq:sec:ideal_axis_positions}

+\end{ditemize}

 

 \section{Future directions}  % ====================================================================

 

-\subsection{Ideal Axis Positions}\label{sec:ideal_axis_positions}  % ------------------------------

+\subsection{Ideal Axis Positions} \label{acq:sec:ideal_axis_positions}  % -------------------------

 

 Frequency domain multidimensional spectroscopy is a time-intensive process.  %

 A typical \gls{pixel} takes between one-half second and three seconds to acquire.  %

@@ -85,7 +92,7 @@ will also ignore these.  %
 Derivations of the ideal pixel positions for each of these lineshapes appear below.

 % TODO: cite Wright Group quantum beating paper, Kambempati breathing paper

 

-\subsection{Exponential}

+\subsubsection{Exponential}

 

 Simple exponential decays are typically used to describe population and coherence-level dynamics in

 CMDS.  %

@@ -124,7 +131,7 @@ S_n &=& (1-c)\left(\frac{n}{N}\right)^{\frac{\tau_{\mathrm{step}}}{\tau_{\mathrm
 \begin{figure}

 	\includegraphics[scale=0.5]{"processing/PyCMDS/ideal axis positions/exponential"}

 	\caption[TODO]{TODO}

-  \label{fig:exponential_steps}

+  \label{aqn:fig:exponential_steps}

 \end{figure}

 

 \subsubsection{Gaussian}