From e5e384c51df4a08b803ce6c1deec9c90775eefab Mon Sep 17 00:00:00 2001
From: Blaise Thompson <blaise@untzag.com>
Date: Wed, 11 Apr 2018 11:51:16 -0500
Subject: 2018-04-11 11:51
---
acquisition/chapter.tex | 8 +----
dissertation.tex | 16 ++++-----
spectroscopy/auto/chapter.el | 1 -
spectroscopy/chapter.tex | 8 -----
todo.org | 80 +++++++++++++++++++++++++++-----------------
todo.org_archive | 78 ++++++++++++++++++++++++++++++++++++++++++
6 files changed, 137 insertions(+), 54 deletions(-)
create mode 100644 todo.org_archive
diff --git a/acquisition/chapter.tex b/acquisition/chapter.tex
index df1c887..d997e44 100644
--- a/acquisition/chapter.tex
+++ b/acquisition/chapter.tex
@@ -891,13 +891,7 @@ Conceptually, can imagine a 4 quadrant system. %
Thus PyCMDS can be proud to try and generalize the hardware-complex part of acquisition software
because indeed that is all that can be generalized. %
-\begin{figure}
- \caption{
- CAPTION TODO: 4 QUADRANTS OF COMPLEXITY
- }
- \label{aqn:fig:complexity_quandrants}
-\end{figure}
-
+\clearpage
\section{Integrations} % =========================================================================
[GOOGLE DRIVE]
diff --git a/dissertation.tex b/dissertation.tex
index 29b092a..a38db68 100644
--- a/dissertation.tex
+++ b/dissertation.tex
@@ -68,17 +68,17 @@ This dissertation is approved by the following members of the Final Oral Committ
\include{software/chapter} % sof
\part{Development} \label{prt:development}
-%\include{processing/chapter} % pro
+\include{processing/chapter} % pro
\include{acquisition/chapter} % acq
-%\include{active_correction/chapter} % act
-%\include{opa/chapter} % opa
-%\include{mixed_domain/chapter}
+\include{active_correction/chapter} % act
+\include{opa/chapter} % opa
+\include{mixed_domain/chapter}
\part{Applications} \label{prt:applications}
-%\include{PbSe_susceptibility/chapter}
-%\include{PbSe_global_analysis/chapter}
-%\include{MX2/chapter}
-%\include{PEDOT_PSS/chapter}
+\include{PbSe_susceptibility/chapter}
+\include{PbSe_global_analysis/chapter}
+\include{MX2/chapter}
+\include{PEDOT_PSS/chapter}
% appendix -----------------------------------------------------------------------------------------
diff --git a/spectroscopy/auto/chapter.el b/spectroscopy/auto/chapter.el
index 6fd7dd7..4966739 100644
--- a/spectroscopy/auto/chapter.el
+++ b/spectroscopy/auto/chapter.el
@@ -3,7 +3,6 @@
(lambda ()
(LaTeX-add-labels
"cha:spc"
- "spc:fig:decongestion"
"spc:fig:power_curves"))
:latex)
diff --git a/spectroscopy/chapter.tex b/spectroscopy/chapter.tex
index eb41d10..cdd3955 100644
--- a/spectroscopy/chapter.tex
+++ b/spectroscopy/chapter.tex
@@ -172,14 +172,6 @@ The most obvious advantage of multidimensional spectroscopy comes directly from
itself. %
Multidimensional spectroscopy can \emph{decongest} spectra with overlapping peaks by isolating
peaks in a multidimensional resonance landscape. %
-Figure \ref{spc:fig:decongestion} shows...
-
-\begin{figure}
- \caption[Dimensionality and decongestion.]{
- CAPTION TODO.
- }
- \label{spc:fig:decongestion}
-\end{figure}
\subsection{Frequency vs time domain} % ----------------------------------------------------------
diff --git a/todo.org b/todo.org
index 15fb378..0f0687c 100644
--- a/todo.org
+++ b/todo.org
@@ -1,38 +1,58 @@
-* DONE draft challenges section :software:
- CLOSED: [2018-04-05 Thu 09:12]
-* DONE quote from RC :introduction:
- CLOSED: [2018-04-07 Sat 11:20]
-* DONE dichotomies :spectroscopy:
- CLOSED: [2018-04-07 Sat 15:57]
-* DONE citations :abstract:
- CLOSED: [2018-04-07 Sat 16:47]
-* DONE citations :introduction:
- CLOSED: [2018-04-07 Sat 18:19]
-* DONE finish intro to oop content :software:
- CLOSED: [2018-04-07 Sat 23:19]
-* DONE incorporate "most software is not peer reviewed" :software:
- CLOSED: [2018-04-07 Sat 23:19]
-** see Joppa reference 6
-* DONE incorporate all references :software:
- CLOSED: [2018-04-07 Sat 23:19]
-* TODO tables :processing:
-* TODO distribution section :processing:
-* TODO development history from github :processing:
-* TODO development section :processing:
-* TODO describe spectroscopic instrument :spectroscopy:
-* TODO more references for object oriented programming :software:
-* TODO "quadrants of complexity" idea :acquisition:
-** TODO figure
-** TODO arguments
-* TODO insert content :PbSe:
+* DONE distribution section :processing:
+ CLOSED: [2018-04-11 Wed 11:28]
+* DONE development history from github :processing:
+ CLOSED: [2018-04-11 Wed 11:29]
+* DONE development section :processing:
+ CLOSED: [2018-04-11 Wed 11:30]
* TODO headers :introduction:
* TODO cite important CMDS discoveries, reviews :introduction:
+* TODO incorporate Nancy's comments :introduction:
+* TODO incorporate Claire's comments :introduction:
* TODO summarize PbSe chapter :introduction:
* TODO summarize MX2 chapter :introduction:
* TODO summarize PEDOT:PSS chapter :introduction:
-* TODO insert content from SI :mixed_domain:
+* TODO verify light-matter interaction content :spectroscopy:
+* TODO finish instrumentation section (darien) :spectroscopy:
+* IDEA linear vs multidimensional figure :spectroscopy:
+* IDEA see Paul's dissertation re: loss of resonance advantage with very fast pulses :spectroscopy:
+* TODO more references for object oriented programming :software:
* IDEA incorporate StoddenVictoria2016a :software:
* IDEA incorporate idea "most people over-trust software" :software:
-* IDEA 2D delay example from ps system :active:
* IDEA consider refactoring or expanding OOP section :software:
-* IDEA see Paul's dissertation re: loss of resonance advantage with very fast pulses :spectroscopy:
+* TODO summary paragraphs in introduction :processing:
+* TODO finish discussing interpolation types :processing:
+** TODO describe figure
+* TODO specialty artists :processing:
+* TODO artist API :processing:
+* TODO gotchas (figures from czech...) :processing:
+* TODO axes content :processing:
+* TODO level :processing:
+* TODO tables :processing:
+* TODO finish describing function objects :processing:
+* TODO describe continuous integration :processing:
+* TODO describe readthedocs documentation :processing:
+* TODO future directions :processing:
+* TODO figure captions :processing:
+* TODO flesh out introduction :acq:
+* TODO show queue figure in GUI section :acq:
+* TODO parents _are_ virtual hardware :acq:
+* TODO hardware advanced panel descriptions :acq:
+* TODO sensors section :acq:
+* TODO autonomic SDC screenshot :acq:
+* TODO acquisition modules :acq:
+* TODO conditional validity :acq:
+* TODO integrations :acq:
+* TODO future directions cleanup :acq:
+* TODO figure captions :acq:
+* TODO introduction paragraphs :act:
+* TODO spectral delay correction :act:
+* TODO poynting correction :act:
+* IDEA excitation power correction :act:
+* TODO chopping (minimal) :act:
+* TODO fibrillation (minimal) :act:
+* TODO conclusions :act:
+* TODO figure captions :act:
+* TODO insert content :PbSe:
+* TODO insert content from SI :mixed_domain:
+* IDEA 2D delay example from ps system :active:
+* TODO verify all references :polish:
diff --git a/todo.org_archive b/todo.org_archive
new file mode 100644
index 0000000..2949981
--- /dev/null
+++ b/todo.org_archive
@@ -0,0 +1,78 @@
+# -*- mode: org -*-
+
+
+Archived entries from file /home/blaise/source/dissertation/todo.org
+
+
+* DONE draft challenges section :software:
+ CLOSED: [2018-04-05 Thu 09:12]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
+
+* DONE quote from RC :introduction:
+ CLOSED: [2018-04-07 Sat 11:20]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
+
+* DONE dichotomies :spectroscopy:
+ CLOSED: [2018-04-07 Sat 15:57]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
+
+* DONE citations :abstract:
+ CLOSED: [2018-04-07 Sat 16:47]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
+
+* DONE citations :introduction:
+ CLOSED: [2018-04-07 Sat 18:19]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
+
+* DONE finish intro to oop content :software:
+ CLOSED: [2018-04-07 Sat 23:19]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
+
+* DONE incorporate "most software is not peer reviewed" :software:
+ CLOSED: [2018-04-07 Sat 23:19]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
+** see Joppa reference 6
+
+* DONE incorporate all references :software:
+ CLOSED: [2018-04-07 Sat 23:19]
+ :PROPERTIES:
+ :ARCHIVE_TIME: 2018-04-11 Wed 11:18
+ :ARCHIVE_FILE: ~/source/dissertation/todo.org
+ :ARCHIVE_CATEGORY: todo
+ :ARCHIVE_TODO: DONE
+ :END:
--
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