From a556dba6d7b956ab6469916d886dfeea8dcc2932 Mon Sep 17 00:00:00 2001
From: John Wright <wright@chem.wisc.edu>
Date: Wed, 4 Apr 2018 12:08:57 -0500
Subject: little warning fixes

---
 acquisition/chapter.tex |  4 ++--
 dissertation.cls        | 10 +++++-----
 opa/chapter.tex         |  2 +-
 processing/chapter.tex  |  2 +-
 4 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/acquisition/chapter.tex b/acquisition/chapter.tex
index 0d3d1c5..0436028 100644
--- a/acquisition/chapter.tex
+++ b/acquisition/chapter.tex
@@ -36,7 +36,7 @@ for w2 in w2_points:
             set_d2(d2)
             measure_signal()
 \end{codefragment}
-In this simple example, there are 5 \python{w1} destinations, 7 \phon{w2} destinations, and 12
+In this simple example, there are 5 \python{w1} destinations, 7 \python{w2} destinations, and 12
 \python{d2} destinations, so there are a total of $5\times7\times12=420$ pixels in the
 three-dimensional scan.  %
 The acquisition software must set the hardware to each of these points and acquire data at each of
@@ -732,7 +732,7 @@ We can write the conjugate equation to \ref{eq:simple_exponential_decay}, asking
 need to get a cerain signal level?'':
 \begin{eqnarray}
 \log{(S)} &=& -\frac{t}{\tau} \\
-t &=& -\taulog{(S)}.
+t &=& -\tau\log{(S)}.
 \end{eqnarray}
 So to step linearly in $t$, my step size has to go as $-\tau\log{(S)}$.
 
diff --git a/dissertation.cls b/dissertation.cls
index afb2dc9..aecaaad 100644
--- a/dissertation.cls
+++ b/dissertation.cls
@@ -118,17 +118,17 @@
   colback=bg,
   boxrule=1pt,
   colframe=bg,
-  arc=0,
+  arc=0pt,
   shadow=false,
-  use counter=equation,
+  new/use counter=equation,
   boxsep=1ex, top=0pt, left=0pt, right=0pt, bottom=0pt,
   comment={\hfill(\arabic{chapter}.\arabic{equation})},
   listing outside comment,
-  righthand width=2.5em,
+  righthand width=3em,
   sidebyside gap=0pt,
   minted language=#1,
-  before skip =-0.5\baselinestretch,
-  after skip=2\baselinestretch,
+  %before skip =-0.5\baselinestretch,
+  %after skip=2\baselinestretch,
 }
 
 \BeforeBeginEnvironment{codefragment}{\begin{singlespace}\stepcounter{equation}}
diff --git a/opa/chapter.tex b/opa/chapter.tex
index 75459b5..a57847a 100644
--- a/opa/chapter.tex
+++ b/opa/chapter.tex
@@ -129,7 +129,7 @@ are shown.  %
 \end{figure}
 
 \begin{figure}
-  \includegraphics[width=\textwidth]{opa/c2}}
+  \includegraphics[width=\textwidth]{opa/c2}
   \caption{
     CAPTION TODO
   }
diff --git a/processing/chapter.tex b/processing/chapter.tex
index 81886c2..baca84c 100644
--- a/processing/chapter.tex
+++ b/processing/chapter.tex
@@ -128,7 +128,7 @@ It contains a central data ``container'' that is capable of storing all of the i
 each multidimensional (or one-dimensional) spectra: the \python{Data} class.  %
 It also defines a \python{Collection} class that contains data objects, collection
 objects, and other pieces of metadata in a hierarchical structure.  %
-Let's first discuss \mitinline{python}{Data}.
+Let's first discuss \mintinline{python}{Data}.
 
 All spectra are stored within WrightTools as multidimensional arrays.  %
 Arrays are containers that store many instances of the same data type, typically numerical
-- 
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