From 97c0cce9063212e416ece9c6fef95b33841800c5 Mon Sep 17 00:00:00 2001 From: Blaise Thompson Date: Sat, 7 Apr 2018 16:49:44 -0500 Subject: 2018-04-07 16:49 --- abstract.tex | 23 +++++++++++------ active_correction/chapter.tex | 2 +- bibliography.bib | 57 ++++++++++++++++++++++++++++++++++++++++++- dissertation.tex | 8 +++--- todo.org | 6 ++++- 5 files changed, 81 insertions(+), 15 deletions(-) diff --git a/abstract.tex b/abstract.tex index 566d95a..c9c8d9e 100644 --- a/abstract.tex +++ b/abstract.tex @@ -5,12 +5,16 @@ Coherent multidimensional spectroscopy (CMDS) encompasses a family of experimental strategies involving the nonlinear interaction between electric fields and a material under investigation. % -This approach has several unique capabilities: 1. resolving congested states [CITE KLUG and % JCW Zhao and Wright-JACS], -2. extracting spectra that would otherwise be selection-rule disallowed [CITE BOYLE], 3. resolving -fully coherent dyanmics [CITE % JCW Pakoulev and Wright], -4. measuring coupling [CITE], and 5. resolving ultrafast dynamics -[CITE]. % - +This approach has several unique capabilities: +\begin{denumerate} + \item resolving congested states \cite{ZhaoWei1999b, DonaldsonPaulMurray2008a} + \item extracting spectra that would otherwise be selection-rule disallowed + \cite{BoyleErinSelene2013b, BoyleErinSelene2014b}, + \item resolving fully coherent dyanmics \cite{PakoulevAndreiV2009a}, + \item measuring coupling \cite{WrightJohnCurtis2011a}, and + \item resolving ultrafast dynamics. % TODO: cite +\end{denumerate} + CMDS can be collected in the frequency or the time domain, and each approach has advantages and disadvantages. % Frequency domain ``Multi-resonant'' CMDS (MR-CMDS) requires pulsed ultrafast light sources with @@ -22,8 +26,11 @@ This signal may be different in frequency from the input pulses, and it may trav direction depending on the exact experiment being performed. % The MR-CMDS experiment involves tracking the intensity of this output signal as a function of different properties of the excitation pulses. % -These properties include 1. frequency 2. relative arrival time and separation (delay) 3. fluence -[CITE Z-SCAN], and 4. polarization [CITE KLUG], among others. % +These properties include +1. frequency +2. relative arrival time and separation (delay) +3. fluence \cite{OmariAbdoulghafar2012a, SheikBahaeMansoor1990a}, and +4. polarization \cite{FournierFrederic2009a}, among others. % Thus MR-CMDS can be thought of as a multidimensional experimental space, where experiments typically involve explorations in one to four of the properties above. % diff --git a/active_correction/chapter.tex b/active_correction/chapter.tex index 76ae49d..e40ff9d 100644 --- a/active_correction/chapter.tex +++ b/active_correction/chapter.tex @@ -1,4 +1,4 @@ -\chapter{Active Correction in MR-CMDS} +\chapter{Active Correction in MR-CMDS} \label{cha:act} \begin{dquote} Calibrate, \\ diff --git a/bibliography.bib b/bibliography.bib index 9e5921c..7133357 100644 --- a/bibliography.bib +++ b/bibliography.bib @@ -1,3 +1,45 @@ +@article{FournierFrederic2009a, + author = {Frederic Fournier and Rui Guo and Elizabeth M. Gardner and Paul M. Donaldson and + Christian Loeffeld and Ian R. Gould and Keith R. Willison and David R. Klug}, + title = {Biological and Biomedical Applications of Two-Dimensional Vibrational + Spectroscopy: Proteomics, Imaging, and Structural Analysis}, + journal = {Accounts of Chemical Research}, + volume = 42, + number = 9, + pages = {1322--1331}, + year = 2009, + doi = {10.1021/ar900074p}, + month = {sep}, + publisher = {American Chemical Society ({ACS})}, +} + +@article{OmariAbdoulghafar2012a, + author = {Abdoulghafar Omari and Iwan Moreels and Francesco Masia and Wolfgang Langbein and + Paola Borri and Dries Van Thourhout and Pascal Kockaert and Zeger Hens}, + title = {Role of interband and photoinduced absorption in the nonlinear refraction and + absorption of resonantly excited {PbS} quantum dots around 1550 nm}, + journal = {Physical Review B}, + volume = 85, + number = 11, + year = 2012, + doi = {10.1103/physrevb.85.115318}, + month = {mar}, + publisher = {American Physical Society ({APS})}, +} + +@article{SheikBahaeMansoor1990a, + author = "Sheik-Bahae, M and Said, AA and Wei, T-H and Hagan, DJ and Van Stryland, EW", + title = "Sensitive measurement of optical nonlinearities using a single beam", + journal = "IEEE journal of quantum electronics.", + volume = 26, + number = 4, + pages = "760--769", + year = 1990, + address = "[New York] :", + issn = "0018-9197", + publisher = "Institute of Electrical and Electronics Engineers", +} + @article{AartsmaThijsJ1976a, author = {Aartsma, Thijs J and Wiersma, Douwe A}, title = {{Photon-echo relaxation in molecular mixed crystals}}, @@ -193,7 +235,7 @@ month = {nov}, } -@article{BoyleErinSelene2014a, +@article{BoyleErinSelene2014b, author = {Boyle, Erin S and Neff-Mallon, Nathan A. and Handali, Jonathan D and Wright, John C}, title = {{Resonance IR: A Coherent Multidimensional Analogue of Resonance Raman}}, @@ -2088,6 +2130,19 @@ year = {1998} month = {oct}, } +@article{WrightJohnCurtis2011a, + author = {John C. Wright}, + title = {Multiresonant Coherent Multidimensional Spectroscopy}, + journal = {Annual Review of Physical Chemistry}, + volume = 62, + number = 1, + pages = {209--230}, + year = 2011, + doi = {10.1146/annurev-physchem-032210-103551}, + month = {may}, + publisher = {Annual Reviews}, +} + @article{WrightJohnCurtis2016a, author = {Wright, John C.}, title = {{Analytical chemistry, multidimensional spectral signatures, and the future of diff --git a/dissertation.tex b/dissertation.tex index 875a366..b1d10fe 100644 --- a/dissertation.tex +++ b/dissertation.tex @@ -72,7 +72,7 @@ This dissertation is approved by the following members of the Final Oral Committ \include{acquisition/chapter} \include{active_correction/chapter} \include{opa/chapter} -%\include{mixed_domain/chapter} +\include{mixed_domain/chapter} \part{Applications} \label{prt:applications} %\include{PbSe/chapter} @@ -89,9 +89,9 @@ This dissertation is approved by the following members of the Final Oral Committ %\include{procedures/chapter} %\include{hardware/chapter} % TODO: consider inserting WrightTools documentation as PDF -\include{irf/chapter} -\include{quantitative_ta/chapter} -\include{tg/chapter} +%\include{irf/chapter} +%\include{quantitative_ta/chapter} +%\include{tg/chapter} %\include{errata/chapter} %\include{colophon/chapter} \end{appendix} diff --git a/todo.org b/todo.org index fef9ecc..6634005 100644 --- a/todo.org +++ b/todo.org @@ -2,7 +2,10 @@ CLOSED: [2018-04-05 Thu 09:12] * DONE quote from RC :introduction: CLOSED: [2018-04-07 Sat 11:20] -* TODO dichotomies :spectroscopy: +* DONE dichotomies :spectroscopy: + CLOSED: [2018-04-07 Sat 15:57] +* DONE citations :abstract: + CLOSED: [2018-04-07 Sat 16:47] * TODO describe spectroscopic instrument :spectroscopy: * TODO incorporate "most software is not peer reviewed" :software: ** see Joppa reference 6 @@ -16,6 +19,7 @@ * TODO tables :processing: * TODO distribution section :processing: * TODO development section :processing: +* TODO development history from github :processing: * TODO insert content :PbSe: * TODO summarize PbSe chapter :introduction: * TODO summarize MX2 chapter :introduction: -- cgit v1.2.3