From 4387f96aef0dcafbbce06e76cf19224537d98772 Mon Sep 17 00:00:00 2001
From: Blaise Thompson <blaise@untzag.com>
Date: Mon, 16 Oct 2017 08:54:52 -0500
Subject: adjustable periscopes

---
 README.md             |   2 --
 appendix/hardware.tex |  35 ++++++++++++++++++++++++++++++-
 appendix/public.tex   |  10 ++++++++-
 build.sh              |  57 ++++++++++++++++++++++++++++++++++++++++++++++++++
 dissertation.pdf      | Bin 2151655 -> 2096934 bytes
 5 files changed, 100 insertions(+), 4 deletions(-)
 create mode 100755 build.sh

diff --git a/README.md b/README.md
index a4c9b31..2452abd 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1 @@
 This is my dissertation.
-
-hello world this is a test
diff --git a/appendix/hardware.tex b/appendix/hardware.tex
index 7a0f409..c69d7e9 100644
--- a/appendix/hardware.tex
+++ b/appendix/hardware.tex
@@ -1 +1,34 @@
-\chapter{Hardware}
+\chapter{Hardware}  % -----------------------------------------------------------------------------
+
+
+\section{Adjustable periscopes}  % ----------------------------------------------------------------
+
+
+Our light sources take on horizontal or vertical polarizations according to which tuning process is
+used.  %
+Our experiments are opinionated about polarization, so some strategy for aligning polarization is
+necessary.  %
+Desire fully reflective, easy to switch without changing path length (delay) etc... For several
+years, we used brewster-angle polarization unifiers...  %
+These worked by...  %
+But these were very difficult to align, and they were too lossy for some of the weaker tuning
+processes.  %
+As an alternative, we designed a more traditional periscope with adjustability for our unique
+needs.  %
+
+
+\subsection{Alignment}  % -------------------------------------------------------------------------
+
+
+\begin{enumerate}
+  \item in flipped polarization:
+    \begin{itemize}
+      \item stage near
+      \item upper mirror far
+    \end{itemize}
+  \item in kept polarization:
+    \begin{itemize}
+      \item stage x and upper mirror height near
+      \item lower mirror far
+    \end{itemize}
+\end{enumerate}
diff --git a/appendix/public.tex b/appendix/public.tex
index 843c760..89cc6af 100644
--- a/appendix/public.tex
+++ b/appendix/public.tex
@@ -1,4 +1,12 @@
 % http://scifun.chem.wisc.edu/Thesis_Awards/chapter_guidelines.html
 
-\chapter{Public}
+\chapter{Public}  % -------------------------------------------------------------------------------
 
+
+\section{Why spectroscopy?}
+
+
+\section{CMDS in practice}  % ---------------------------------------------------------------------
+
+
+\subsection{Ultrafast light sources}
\ No newline at end of file
diff --git a/build.sh b/build.sh
new file mode 100755
index 0000000..d021877
--- /dev/null
+++ b/build.sh
@@ -0,0 +1,57 @@
+set -e  # force exit upon error
+
+function printColor {
+  YELLOW='\033[0;33m'
+  NC='\033[0m' # No Color
+  printf "${YELLOW}$*${NC}\n"
+}
+
+function printLine {
+  printColor "%`tput cols`s"|tr ' ' '#'
+}
+
+function printThenPython {
+  printColor "python $*"
+  python "$*"
+}
+
+if [[ $# -eq 0 ]] ; then
+    echo 'please provide an argument in [data, simulations, figures, documents, all]'
+    exit 1
+fi
+
+# process data
+if [[ "$1" = "all" ]] || [[ "$1" = "data" ]] ; then
+  printLine
+  printColor data
+  #printThenPython "data/TA A.py"
+  #printThenPython "data/TA B.py"
+  #printThenPython "data/TG A.py"
+  #printThenPython "data/TG B.py"  
+fi
+
+# make figures
+if [[ "$1" = "all" ]] || [[ "$1" = "figures" ]] ; then
+  printLine
+  printColor figures
+  #printThenPython "figures/absorbance.py"
+  #printThenPython "figures/m_factors.py"
+  #printThenPython "figures/movies_fitted.py"
+  #printThenPython "figures/movies_combined.py"
+  #printThenPython "figures/power_factors.py"
+  #printThenPython "figures/driven_initial.py"
+  #printThenPython "figures/TA_artifacts.py"
+  #printThenPython "figures/TG_artifacts.py"
+fi
+
+# render documents
+if [[ "$1" = "all" ]] || [[ "$1" = "dissertation" ]] ; then
+  printLine
+  printColor documents
+  pdflatex --interaction=nonstopmode dissertation
+  bibtex main
+  pdflatex --interaction=nonstopmode dissertation
+  pdflatex --interaction=nonstopmode dissertation
+fi
+
+printColor finished
diff --git a/dissertation.pdf b/dissertation.pdf
index 5c5599e..aef1b9f 100644
Binary files a/dissertation.pdf and b/dissertation.pdf differ
-- 
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