diff options
| -rw-r--r-- | abstract.tex | 23 | ||||
| -rw-r--r-- | active_correction/chapter.tex | 2 | ||||
| -rw-r--r-- | bibliography.bib | 57 | ||||
| -rw-r--r-- | dissertation.tex | 8 | ||||
| -rw-r--r-- | todo.org | 6 |
5 files changed, 81 insertions, 15 deletions
diff --git a/abstract.tex b/abstract.tex index 566d95a..c9c8d9e 100644 --- a/abstract.tex +++ b/abstract.tex @@ -5,12 +5,16 @@ Coherent multidimensional spectroscopy (CMDS) encompasses a family of experimental strategies involving the nonlinear interaction between electric fields and a material under investigation. % -This approach has several unique capabilities: 1. resolving congested states [CITE KLUG and % JCW Zhao and Wright-JACS], -2. extracting spectra that would otherwise be selection-rule disallowed [CITE BOYLE], 3. resolving -fully coherent dyanmics [CITE % JCW Pakoulev and Wright], -4. measuring coupling [CITE], and 5. resolving ultrafast dynamics -[CITE]. % - +This approach has several unique capabilities: +\begin{denumerate} + \item resolving congested states \cite{ZhaoWei1999b, DonaldsonPaulMurray2008a} + \item extracting spectra that would otherwise be selection-rule disallowed + \cite{BoyleErinSelene2013b, BoyleErinSelene2014b}, + \item resolving fully coherent dyanmics \cite{PakoulevAndreiV2009a}, + \item measuring coupling \cite{WrightJohnCurtis2011a}, and + \item resolving ultrafast dynamics. % TODO: cite +\end{denumerate} + CMDS can be collected in the frequency or the time domain, and each approach has advantages and disadvantages. % Frequency domain ``Multi-resonant'' CMDS (MR-CMDS) requires pulsed ultrafast light sources with @@ -22,8 +26,11 @@ This signal may be different in frequency from the input pulses, and it may trav direction depending on the exact experiment being performed. % The MR-CMDS experiment involves tracking the intensity of this output signal as a function of different properties of the excitation pulses. % -These properties include 1. frequency 2. relative arrival time and separation (delay) 3. fluence -[CITE Z-SCAN], and 4. polarization [CITE KLUG], among others. % +These properties include +1. frequency +2. relative arrival time and separation (delay) +3. fluence \cite{OmariAbdoulghafar2012a, SheikBahaeMansoor1990a}, and +4. polarization \cite{FournierFrederic2009a}, among others. % Thus MR-CMDS can be thought of as a multidimensional experimental space, where experiments typically involve explorations in one to four of the properties above. % diff --git a/active_correction/chapter.tex b/active_correction/chapter.tex index 76ae49d..e40ff9d 100644 --- a/active_correction/chapter.tex +++ b/active_correction/chapter.tex @@ -1,4 +1,4 @@ -\chapter{Active Correction in MR-CMDS}
+\chapter{Active Correction in MR-CMDS} \label{cha:act}
\begin{dquote}
Calibrate, \\
diff --git a/bibliography.bib b/bibliography.bib index 9e5921c..7133357 100644 --- a/bibliography.bib +++ b/bibliography.bib @@ -1,3 +1,45 @@ +@article{FournierFrederic2009a,
+ author = {Frederic Fournier and Rui Guo and Elizabeth M. Gardner and Paul M. Donaldson and
+ Christian Loeffeld and Ian R. Gould and Keith R. Willison and David R. Klug},
+ title = {Biological and Biomedical Applications of Two-Dimensional Vibrational
+ Spectroscopy: Proteomics, Imaging, and Structural Analysis},
+ journal = {Accounts of Chemical Research},
+ volume = 42,
+ number = 9,
+ pages = {1322--1331},
+ year = 2009,
+ doi = {10.1021/ar900074p},
+ month = {sep},
+ publisher = {American Chemical Society ({ACS})},
+}
+
+@article{OmariAbdoulghafar2012a,
+ author = {Abdoulghafar Omari and Iwan Moreels and Francesco Masia and Wolfgang Langbein and
+ Paola Borri and Dries Van Thourhout and Pascal Kockaert and Zeger Hens},
+ title = {Role of interband and photoinduced absorption in the nonlinear refraction and
+ absorption of resonantly excited {PbS} quantum dots around 1550 nm},
+ journal = {Physical Review B},
+ volume = 85,
+ number = 11,
+ year = 2012,
+ doi = {10.1103/physrevb.85.115318},
+ month = {mar},
+ publisher = {American Physical Society ({APS})},
+}
+
+@article{SheikBahaeMansoor1990a,
+ author = "Sheik-Bahae, M and Said, AA and Wei, T-H and Hagan, DJ and Van Stryland, EW",
+ title = "Sensitive measurement of optical nonlinearities using a single beam",
+ journal = "IEEE journal of quantum electronics.",
+ volume = 26,
+ number = 4,
+ pages = "760--769",
+ year = 1990,
+ address = "[New York] :",
+ issn = "0018-9197",
+ publisher = "Institute of Electrical and Electronics Engineers",
+}
+
@article{AartsmaThijsJ1976a,
author = {Aartsma, Thijs J and Wiersma, Douwe A},
title = {{Photon-echo relaxation in molecular mixed crystals}},
@@ -193,7 +235,7 @@ month = {nov},
}
-@article{BoyleErinSelene2014a,
+@article{BoyleErinSelene2014b,
author = {Boyle, Erin S and Neff-Mallon, Nathan A. and Handali, Jonathan D and Wright, John
C},
title = {{Resonance IR: A Coherent Multidimensional Analogue of Resonance Raman}},
@@ -2088,6 +2130,19 @@ year = {1998} month = {oct},
}
+@article{WrightJohnCurtis2011a,
+ author = {John C. Wright},
+ title = {Multiresonant Coherent Multidimensional Spectroscopy},
+ journal = {Annual Review of Physical Chemistry},
+ volume = 62,
+ number = 1,
+ pages = {209--230},
+ year = 2011,
+ doi = {10.1146/annurev-physchem-032210-103551},
+ month = {may},
+ publisher = {Annual Reviews},
+}
+
@article{WrightJohnCurtis2016a,
author = {Wright, John C.},
title = {{Analytical chemistry, multidimensional spectral signatures, and the future of
diff --git a/dissertation.tex b/dissertation.tex index 875a366..b1d10fe 100644 --- a/dissertation.tex +++ b/dissertation.tex @@ -72,7 +72,7 @@ This dissertation is approved by the following members of the Final Oral Committ \include{acquisition/chapter}
\include{active_correction/chapter}
\include{opa/chapter}
-%\include{mixed_domain/chapter}
+\include{mixed_domain/chapter}
\part{Applications} \label{prt:applications}
%\include{PbSe/chapter}
@@ -89,9 +89,9 @@ This dissertation is approved by the following members of the Final Oral Committ %\include{procedures/chapter}
%\include{hardware/chapter}
% TODO: consider inserting WrightTools documentation as PDF
-\include{irf/chapter}
-\include{quantitative_ta/chapter}
-\include{tg/chapter}
+%\include{irf/chapter}
+%\include{quantitative_ta/chapter}
+%\include{tg/chapter}
%\include{errata/chapter}
%\include{colophon/chapter}
\end{appendix}
@@ -2,7 +2,10 @@ CLOSED: [2018-04-05 Thu 09:12] * DONE quote from RC :introduction: CLOSED: [2018-04-07 Sat 11:20] -* TODO dichotomies :spectroscopy: +* DONE dichotomies :spectroscopy: + CLOSED: [2018-04-07 Sat 15:57] +* DONE citations :abstract: + CLOSED: [2018-04-07 Sat 16:47] * TODO describe spectroscopic instrument :spectroscopy: * TODO incorporate "most software is not peer reviewed" :software: ** see Joppa reference 6 @@ -16,6 +19,7 @@ * TODO tables :processing: * TODO distribution section :processing: * TODO development section :processing: +* TODO development history from github :processing: * TODO insert content :PbSe: * TODO summarize PbSe chapter :introduction: * TODO summarize MX2 chapter :introduction: |